View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6520_low_6 (Length: 239)
Name: NF6520_low_6
Description: NF6520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6520_low_6 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 3216398 - 3216175
Alignment:
| Q |
16 |
catcaacactgttgccacttgtgtatgcaggttctgttaatataagtgataattccattgccttttgtggtcctatttccatgaagaacattgatgttaa |
115 |
Q |
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| T |
3216398 |
catcaacactgttgccacttgtgtatgcaggttctgttaatataagtgataattccattgccttttgtggtcctatttccatgaagaacattgatgttaa |
3216299 |
T |
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| Q |
116 |
gggaaaggtagttttgtgtgaggaaggtggacttgtttcacaagcagcgaaagctcaagcagttaaagacgctggtggatctgccatgatcctcatgaat |
215 |
Q |
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| T |
3216298 |
gggaaaggtagttttgtgtgaggaaggtggacttgtttcacaagcagcgaaagctcaagcagttaaagacgctggtggatctgccatgatcctcatgaat |
3216199 |
T |
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| Q |
216 |
agtaaacttcaaggttttgatcca |
239 |
Q |
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| T |
3216198 |
agtaaacttcaaggttttgatcca |
3216175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 27 - 193
Target Start/End: Complemental strand, 3208448 - 3208282
Alignment:
| Q |
27 |
ttgccacttgtgtatgcaggttctgttaatataagtgataattccattgccttttgtggtcctatttccatgaagaacattgatgttaagggaaaggtag |
126 |
Q |
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| T |
3208448 |
ttgccacttgtgtatgcaggttcaattaatacaagtgatgattccattgccttttgtggtcctattgccatgaagaaggttgatgttaagggaaaaatag |
3208349 |
T |
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| Q |
127 |
ttttgtgtgaggaaggtggacttgtttcacaagcagcgaaagctcaagcagttaaagacgctggtgg |
193 |
Q |
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| T |
3208348 |
ttgtgtgtgagcaaggtgggtttgttggaagagtagccaaaggtcaagcagttaaagatgccggtgg |
3208282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 193
Target Start/End: Complemental strand, 3202485 - 3202308
Alignment:
| Q |
16 |
catcaacactgttgccacttgtgtatgcaggttctgttaatataagtgataattccattgccttttgtggtcctatttccatgaagaacattgatgttaa |
115 |
Q |
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| T |
3202485 |
catcaacattattgccacttgtgtatgcaggtgcaattaacacaagtgatgatttcattgccttttgtaatcctttttccatggagaatgttgatgttaa |
3202386 |
T |
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| Q |
116 |
gggaaaggtagttttgtgtgaggaaggtggacttgtttcacaagcagcgaaagctcaagcagttaaagacgctggtgg |
193 |
Q |
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| T |
3202385 |
gggaaaggtagtagtgtgtgagcaagatggatcggttgaaagagtagccaaaggtcaagcagttaaagatgctggtgg |
3202308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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