View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6521_low_1 (Length: 470)
Name: NF6521_low_1
Description: NF6521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6521_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 46 - 452
Target Start/End: Complemental strand, 2531701 - 2531282
Alignment:
| Q |
46 |
gtgtgtgtaggggg-tgtcaattgtttaagatgatacataccccaggtcgagcacatgatttgcattgccaccaagtcgaaccatctccatcgagtactc |
144 |
Q |
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|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2531701 |
gtgtgtgtagggggatgtcaattgtataagatgatacataccccaggtcgagcacatgatttgcattgccaccaagtcgaaccatctccatcgagtactc |
2531602 |
T |
|
| Q |
145 |
ctcgaccattaccttcaattgtgagtccttctacagattgcacggtaatccaatatgactgagctttccaacctacctttgaaggtgcaactattttccc |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2531601 |
ctcgaccattaccttcaattgtgagtccttctacagattgcacggtaatccaatatgactgagctttccaacctacctttgaaggtgcaactattttccc |
2531502 |
T |
|
| Q |
245 |
ttcaagctacaaaaagatagatggcaaaaatacaaaacaaatataatttctttaaatattttaaaagccgcaatt------------aaaacttatacat |
332 |
Q |
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| T |
2531501 |
ttcaagctacaaaaagatagatggcaaaaatacaaaacaaatataatttctttaaatattttaaaagccgcaattaaaaatacaattaaaacttatacat |
2531402 |
T |
|
| Q |
333 |
atgattataagtttattgtactaggtcttaaaagtgaacgttagatatactaaatacctgaataagaatatttttgttggtgcaaggaccgctaaaactt |
432 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2531401 |
atgattataagtttattgtactaggtcttaaaagtgaatgttagatatattaaatacctgaataagaatatttttgttggtgcaaggaccgctaaaactt |
2531302 |
T |
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| Q |
433 |
agtttcgacaccataaatgt |
452 |
Q |
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| T |
2531301 |
agtttcgacaccataaatgt |
2531282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 61 - 452
Target Start/End: Complemental strand, 2541008 - 2540618
Alignment:
| Q |
61 |
gtcaattgtttaagatgatacataccccaggtcgagcacatgatttgcattgccaccaagtcgaaccatctccatcgagtactcctcgaccattaccttc |
160 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
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| T |
2541008 |
gtcaattgtttaagatgatacataccccaggtcgatcacatgatttgcattgccaccaagtcgaaccatctccatcgagtactcctcgaccatgaccatt |
2540909 |
T |
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| Q |
161 |
aattgtgagtccttctacagattgcacggtaatccaatatgactgagctttccaacctacctttgaaggtgcaactattttcccttcaagctacaaaaag |
260 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2540908 |
aattgtgagtccttctacagattgcacggtaatccaatatgactgagctttccaatgtaccttagaaggtgcaactattttcccttcaagctacaaaaag |
2540809 |
T |
|
| Q |
261 |
atagatggcaaaaatacaaaacaaatataatttctttaaatattttaaaagccgcaattaaaacttatacatatgattataagtttattgtactaggtct |
360 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2540808 |
atagatggcaaaaatacaaaacaaatataatttctttaatcattttaaaagccgcaattaaaacttataca-atgattataagtttattgtactaggtct |
2540710 |
T |
|
| Q |
361 |
taaaagtgaacgttagatatactaaatacctgaataagaatatttttgttggtgcaaggaccgctaaaacttagtttcgacaccataaatgt |
452 |
Q |
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|||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2540709 |
taaaagtgaatgttagatatattaaatacctgaataagaatatgtttgttggtgcaaggaccgttaaaacttagtttcgacaccataaatgt |
2540618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 113 - 273
Target Start/End: Complemental strand, 1829743 - 1829582
Alignment:
| Q |
113 |
ccaccaagtcgaaccatctccatcgagtactcctcgaccattaccttcaattgtgagtccttctacagattgcacggtaatccaatatgactgagctttc |
212 |
Q |
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||||||||| ||||| |||||||| ||| ||||| |||||||||| |||||||||||||| | |||| ||| | |||| ||||||||| || |||||| |
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| T |
1829743 |
ccaccaagtagaaccgtctccatcaagtcctccttgaccattaccatcaattgtgagtccatttacatattcaatagtaaaccaatatgattgtgctttc |
1829644 |
T |
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| Q |
213 |
caacctacctttgaaggtgcaactattttcccttcaagctacaa-aaagatagatggcaaaa |
273 |
Q |
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|| | |||| || ||||||||||| | ||||||||||| ||| | |||||||||| |||| |
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| T |
1829643 |
gaatttgccttagagggtgcaactatctgcccttcaagctgcaatatagatagatggaaaaa |
1829582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 113 - 273
Target Start/End: Complemental strand, 1864188 - 1864027
Alignment:
| Q |
113 |
ccaccaagtcgaaccatctccatcgagtactcctcgaccattaccttcaattgtgagtccttctacagattgcacggtaatccaatatgactgagctttc |
212 |
Q |
| |
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||||||||| ||||| |||||||| ||| ||||| |||||||||| |||||||||||||| | |||| ||| | |||| ||||||||| || |||||| |
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| T |
1864188 |
ccaccaagtagaaccgtctccatcaagtcctccttgaccattaccatcaattgtgagtccatttacatattcaatagtaaaccaatatgattgtgctttc |
1864089 |
T |
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| Q |
213 |
caacctacctttgaaggtgcaactattttcccttcaagctacaa-aaagatagatggcaaaa |
273 |
Q |
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|| | |||| || ||||||||||| | ||||||||||| ||| | |||||||||| |||| |
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| T |
1864088 |
gaatttgccttagagggtgcaactatctgcccttcaagctgcaatatagatagatggaaaaa |
1864027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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