View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6521_low_11 (Length: 247)
Name: NF6521_low_11
Description: NF6521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6521_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 37041466 - 37041694
Alignment:
| Q |
1 |
tcatgcaagttgtaagtttgtggaagcacctgtctacaccaagagtctgaccaaaaatttatctgttttccatcaccaacaatccaagaacaattatcct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
37041466 |
tcatgcaagttgtaagtttgtggaagcacctgtctacaccaagagtctgaccagaaatttatctattttccatcaccaacaatccaagaacaattatcct |
37041565 |
T |
|
| Q |
101 |
tgataacatgaaattcagccttaactccactccaaatagatgaggagatgtgatgagtgatgcatctgtgatctctaataactctacttctgatgaaaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
37041566 |
tgataacatgaaattcagccttaactccactccaaatagatgaggagatgtgatgagtgatgcatctgtgatctctaataactctgcttccgatgaaaat |
37041665 |
T |
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| Q |
201 |
tgtttttctgacttccagaagttcctaat |
229 |
Q |
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| T |
37041666 |
tgcttttctgacttccagaagttcctaat |
37041694 |
T |
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Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 34243681 - 34243862
Alignment:
| Q |
13 |
taagtttgtggaagcacctgtctacaccaagagtctgaccaaaaatttatctgttttccatcaccaacaatccaagaacaattatccttgataacatgaa |
112 |
Q |
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| T |
34243681 |
taagtttgagcaagcacctgtccacaccaggaatctgaccagaaatttatctgttttccatctcctacaatccaagaacaattatccttgataacatgaa |
34243780 |
T |
|
| Q |
113 |
attcagccttaactccactccaaatagatgaggagatgtgatgagtgatgcatctgtgatctctaataactctacttctgat |
194 |
Q |
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| T |
34243781 |
actcagccttaacaccactccagatggatgaggaaatgtgatgattcatgcatctgtgatctctaataactctacttctgat |
34243862 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 3 - 165
Target Start/End: Original strand, 13142842 - 13143004
Alignment:
| Q |
3 |
atgcaagttgtaagtttgtggaagcacctgtctacaccaagagtctgaccaaaaatttatctgttttccatcaccaacaatccaagaacaattatccttg |
102 |
Q |
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||||| |||||||||||| ||||| ||||||| | ||||||||||||||||||||||||| ||||| |||| |||||| |||||||| | || | | || |
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| T |
13142842 |
atgcacgttgtaagtttgaggaagaacctgtccagaccaagagtctgaccaaaaatttatttgtttcccattaccaactatccaagagctgttgttcatg |
13142941 |
T |
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| Q |
103 |
ataacatgaaattcagccttaactccactccaaatagatgaggagatgtgatgagtgatgcat |
165 |
Q |
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| T |
13142942 |
ataacttgaaattcacctttaactccactccatatagatgagaagatgtgatgattaatgcat |
13143004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 13140058 - 13140248
Alignment:
| Q |
1 |
tcatgcaagttgtaagtttgtggaagcacctgtctacaccaagagtctgaccaaaaatttatctgttttccatcaccaacaatccaagaacaattatcct |
100 |
Q |
| |
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||||||| ||||||||||| | ||| | ||||| ||||||||||||||||||||||||||| ||||| |||| |||||| |||||||| || || | | |
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| T |
13140058 |
tcatgcacgttgtaagtttcagcaagaatctgtccacaccaagagtctgaccaaaaatttatttgtttcccattaccaactatccaagagcagttgttca |
13140157 |
T |
|
| Q |
101 |
tgataacatgaaattcagccttaactccactccaaatagatgaggagatgtgatgagtgatgcatctgtgatctctaataactctacttct |
191 |
Q |
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||||||| ||||||||| | |||||||||||||| ||||||||| ||||||| ||| | |||||| | || ||||| | |||||| ||||| |
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| T |
13140158 |
tgataacttgaaattcacctttaactccactccagatagatgagaagatgtggtgattaatgcatttatggtctcttaaaactctgcttct |
13140248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 24558758 - 24558948
Alignment:
| Q |
1 |
tcatgcaagttgtaagtttgtggaagcacctgtctacaccaagagtctgaccaaaaatttatctgttttccatcaccaacaatccaagaacaattatcct |
100 |
Q |
| |
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||||||| ||||||||||| | ||| | ||||| ||||||||||||||||||||||||||| ||||| |||| |||||| |||||||| || || | | |
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| T |
24558758 |
tcatgcacgttgtaagtttcagcaagaatctgtccacaccaagagtctgaccaaaaatttatttgtttcccattaccaactatccaagagcagttgttca |
24558857 |
T |
|
| Q |
101 |
tgataacatgaaattcagccttaactccactccaaatagatgaggagatgtgatgagtgatgcatctgtgatctctaataactctacttct |
191 |
Q |
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||||||| ||||||||| | |||||||||||||| ||||||||| ||||||| ||| | |||||| | || ||||| | |||||| ||||| |
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| T |
24558858 |
tgataacttgaaattcacctttaactccactccagatagatgagaagatgtggtgattaatgcatttatggtctcttaaaactctgcttct |
24558948 |
T |
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