View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6521_low_12 (Length: 242)
Name: NF6521_low_12
Description: NF6521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6521_low_12 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 12 - 242
Target Start/End: Original strand, 25606830 - 25607060
Alignment:
| Q |
12 |
aagaacaatagtttgtggtgatggaaacaacgtggtatcaacatttgtctttaactaaggattgaaaaagtgtaattatacgtgcggcacataaatccaa |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
25606830 |
aagaacaatagtttgtggtgatggaaacaacgtggtatcaacatttgtctttaactaaggattgaaaaagtgttattatacgtgcggcacataaatccaa |
25606929 |
T |
|
| Q |
112 |
gataatatgatagattaaacaagaagatgcatttaaataataataacttaagaagcaaggaacagatctctataccttaaaaatcaaaacaaacgaattt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25606930 |
gataatatgatagattaaacaagaagatgcatttaaataataataacttaagaagcaaggaacagatctctataccttaaaaatcaaaacaaacgaattt |
25607029 |
T |
|
| Q |
212 |
cgtatctgaagaatattttagagatcagaat |
242 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |
|
|
| T |
25607030 |
cgtatctgaagaatattttagaaatcagaat |
25607060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University