View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6521_low_14 (Length: 234)
Name: NF6521_low_14
Description: NF6521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6521_low_14 |
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| [»] scaffold0316 (1 HSPs) |
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Alignment Details
Target: scaffold0316 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: scaffold0316
Description:
Target: scaffold0316; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 4 - 219
Target Start/End: Complemental strand, 16722 - 16508
Alignment:
| Q |
4 |
gtttcatttcaagtttttgttcaataattgttatatggtgtttaattattgaatgcaatgaaataaaaagtaccctttttcttaaaacacttaaagtttt |
103 |
Q |
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| T |
16722 |
gtttcatttcaagtttttgttcaataattgttatatggtgtttaattattgaatgcaatgaaataaaaagtaccctttttcttaaaacacttaaagtttt |
16623 |
T |
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| Q |
104 |
aaactttgagaaaacccaatannnnnnnaactttataactgtttcaatttgtgaatgtggttttatttttctgtattctttcttcaattttctattgggt |
203 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
16622 |
aaactttgagaaaacccaata-ttttttaactttataactgtttcaatttgtgaatgtggttttatttttctgtattctttcttcaattctcaattgggt |
16524 |
T |
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| Q |
204 |
caaaagggttataatt |
219 |
Q |
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|||||||||||||||| |
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| T |
16523 |
caaaagggttataatt |
16508 |
T |
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