View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6521_low_15 (Length: 231)
Name: NF6521_low_15
Description: NF6521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6521_low_15 |
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| [»] scaffold0288 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 28288671 - 28288894
Alignment:
| Q |
1 |
ttgtgcgtatctattttcctctactggaattgggttacttatatatatatcatacacgtgaaaaatttagcttttgaatgagtgactcagagcataaata |
100 |
Q |
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| T |
28288671 |
ttgtgcgtatctattttcctctactggaattgggttacttata--tatatcatacacgtgaaaaatttagcttttgaatgagtgactcagagcataaata |
28288768 |
T |
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| Q |
101 |
tagtgagcacttgcataaaaccgtttttctggtgagaaaaatgaggcaaagcttgactaaccgattcaagggcttcttcaagcttttgcgtacaagattc |
200 |
Q |
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| T |
28288769 |
tagtgagcacttgcataaaaccgtttttctggtgagaaaaatgaggcaaagcttgactaaccgattcaagggcttcttcaagcttttgcgtacaagattc |
28288868 |
T |
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| Q |
201 |
atttttggatatagccctaatttttt |
226 |
Q |
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| T |
28288869 |
atttttggatatagccctaatttttt |
28288894 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 116
Target Start/End: Complemental strand, 8253328 - 8253267
Alignment:
| Q |
54 |
acacgtgaaaaatttagcttttgaatgagtgactcagagcataaatatagtgagcacttgcat |
116 |
Q |
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| T |
8253328 |
acacgtgaaaaatccagcttttgaatgagctactcaaagcataaatatag-gagcacttgcat |
8253267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 158
Target Start/End: Complemental strand, 14256 - 14193
Alignment:
| Q |
93 |
cataaatatagtgagcacttgcataaaaccgtttttctggtgagaaaaatgaggcaaagcttgact |
158 |
Q |
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| T |
14256 |
cataattatagggagcatttgcataaaa--gtttttcaggggagaaaaataaggcaaagcttgact |
14193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 14329079 - 14329027
Alignment:
| Q |
51 |
catacacgtgaaaaatttagcttttgaatgagtgactcagagcataaatatag |
103 |
Q |
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| T |
14329079 |
catacatgtgaaaaattaagcttttgaatgagtcactaaaagcagaaatatag |
14329027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 14422089 - 14422037
Alignment:
| Q |
51 |
catacacgtgaaaaatttagcttttgaatgagtgactcagagcataaatatag |
103 |
Q |
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| T |
14422089 |
catacatgtgaaaaattaagcttttgaatgagtcactaaaagcagaaatatag |
14422037 |
T |
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