View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6521_low_16 (Length: 230)
Name: NF6521_low_16
Description: NF6521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6521_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 1403892 - 1403947
Alignment:
| Q |
156 |
acagataactaactaaccaatcaaacagctttgaattactcattgcctcaaatctt |
211 |
Q |
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| T |
1403892 |
acagataactaactaaccgatcaaacagctttgaattactcattgcctcaaatctt |
1403947 |
T |
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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 1403657 - 1403694
Alignment:
| Q |
1 |
ctcaagtaaagtcaaaaacataattgtaggaagatctc |
38 |
Q |
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| T |
1403657 |
ctcaagtaaagtcaaaaacataattgtgggaagatctc |
1403694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 1403848 - 1403890
Alignment:
| Q |
89 |
tcagaaacacata--gccatatgattataatacagaaaattta |
129 |
Q |
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| T |
1403848 |
tcagaaacacatatagccatatgattataatacagaaaattta |
1403890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Original strand, 1403711 - 1403745
Alignment:
| Q |
53 |
gtcataattagttgaagtgaaataaacattaaatc |
87 |
Q |
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| T |
1403711 |
gtcacaattagttgaagtgaaataaacattaaatc |
1403745 |
T |
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