View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6521_low_18 (Length: 213)
Name: NF6521_low_18
Description: NF6521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6521_low_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 16 - 194
Target Start/End: Complemental strand, 47575670 - 47575492
Alignment:
| Q |
16 |
aatatgcacacacattttgcttaatgaattaatgcctttactttttctatttacaaagttctaagtgtatggtacatttccatacggattccaatgttct |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
47575670 |
aatatgcacacacattttgcttaatgaattaatgcctttactttttctatttacaaagttctaagtgtatggtacatttccataccgattccaatgttct |
47575571 |
T |
|
| Q |
116 |
ttacccgattccttgattttgccaattagttttattcgaacatgtagatgttctctattatatgttatagtttaccatg |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47575570 |
ttacccgattccttgattttgccaattagttttattcgaacatgtagatgttctctattatatgttatagtttaccatg |
47575492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 47585359 - 47585276
Alignment:
| Q |
16 |
aatatgcacacacattttgcttaatgaattaatgcctttactttttctatttacaaagttctaagtgtatggtacatttccata |
99 |
Q |
| |
|
|||| ||||||| |||||||||||||| ||||||||||| |||||||||||| ||||||||| | | |||||||||||||||| |
|
|
| T |
47585359 |
aataggcacacagattttgcttaatgagttaatgccttttctttttctatttccaaagttcttaattcatggtacatttccata |
47585276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University