View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6521_low_19 (Length: 210)
Name: NF6521_low_19
Description: NF6521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6521_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 102; Significance: 8e-51; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 34958995 - 34959156
Alignment:
| Q |
20 |
tggagctaggcagccatattgtattgtcataaagacttataaatacttgtatcacgggatgaagtttcttgtttgaatggtttgttcgtaggaatcaaat |
119 |
Q |
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| T |
34958995 |
tggagctaggcagccatattgtattgtcataaagacttataaatacttgtatcgcgggatgaagtttcttgtttgaatggtttgttcgtaggaatcaaat |
34959094 |
T |
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| Q |
120 |
aannnnnnngctaaatattgtacacaatacaatcagaatatgtacatgtaatattttcgaccttacacgat |
190 |
Q |
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| T |
34959095 |
aatattttagc---------aacacagtacaatcagaatatgtatatgtaatattttcgaccttacacgat |
34959156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 34954802 - 34954972
Alignment:
| Q |
20 |
tggagctaggcagccatattgtatt-gtcataaagacttataaatacttgtatcacgggatgaagtttcttgtttgaatggtttgttcgtaggaatcaaa |
118 |
Q |
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| T |
34954802 |
tggagctacgcagccatattgtatttgtcata--gtcttataaatacttgtattgcgggatgaattttcttgtttgaatggtttgttcgtaggaatcaaa |
34954899 |
T |
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| Q |
119 |
taannnnnnngct-aaatattgtacacaatacaatcagaatatgtacatgtaatattttcgaccttacacgat |
190 |
Q |
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| T |
34954900 |
taatatttttgctaaaatattgtacacaatacaatcagaatatgtacatgtaatattttcgtccttacacgat |
34954972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 34954739 - 34954791
Alignment:
| Q |
20 |
tggagctaggcagccatattgtattgtcataaagacttataaatacttgtatc |
72 |
Q |
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| T |
34954739 |
tggagctaggcagccatattgtattgtcataacgtcttctaaatacttgtatc |
34954791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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