View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6521_low_5 (Length: 354)
Name: NF6521_low_5
Description: NF6521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6521_low_5 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 12 - 354
Target Start/End: Complemental strand, 34959570 - 34959228
Alignment:
| Q |
12 |
acagatacgttgtgtaagagtgctgccaaagaggctttgcaaacaacaagaactcgagaacaattgttcttatttgacatgattcttaggtctctcctgc |
111 |
Q |
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| T |
34959570 |
acagatacgttgtgtaagagtgctgccaaagaggctttgcaaacaacaagaactcgagaacaattgttcttatgtgacatgattcttaggtctctcctgc |
34959471 |
T |
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| Q |
112 |
cattattcttatgtgacatgatttatccaattgttcctagttgaataggggatgatcctggggctatgctatgcccctttgctcccacaaagatggaaat |
211 |
Q |
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| T |
34959470 |
cattattcttatgtgacatgatttatccaattgttgctagttgaataggggatgatcctggggctatgctatgcccctttgctcccacaaagatggaaat |
34959371 |
T |
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| Q |
212 |
aaaaattagaggacaatcctaaagagcaacatatggcagaggttcacaggcccttgagaagatcttggaaccgtatggcagaggtttgtgcagaaaattg |
311 |
Q |
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| T |
34959370 |
aaaaattagaggacaatcctaaagagcaacatatggcagaggttcacaggcccttgaaaagaacttgggaacatatggcagaggtttgtgcagaaaattg |
34959271 |
T |
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| Q |
312 |
aagatctattgtgttgtgtgtgcatgtgttctttctctgtaat |
354 |
Q |
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| T |
34959270 |
aagatctattgtgttgtgtgtgcatgtgttctttctctgtaat |
34959228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 11 - 279
Target Start/End: Complemental strand, 34955532 - 34955254
Alignment:
| Q |
11 |
cacagatacgttgtgtaagagtgctgccaaagaggctttgcaaacaacaagaactcgagaacaattgtt--ctt----------atttgacat--gattc |
96 |
Q |
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| T |
34955532 |
cacagatatgttgtgtaagagtgctgccaaagaggctttacaaacaacgagaactcgagaacaaatcatgactttctaagtataatttggcatacgat-c |
34955434 |
T |
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| Q |
97 |
ttaggtctctcctgccattattcttatgtgacatgatttatccaattgttcctagttgaataggggatgatcctggggctatgctatgcccctttgctcc |
196 |
Q |
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| T |
34955433 |
tcaggtctctccagccattattcttatgtgacatgattcatccaattgttgctagttgaataggggatgatcc-cgggctatg--atgcccctttgttcc |
34955337 |
T |
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| Q |
197 |
cacaaagatggaaataaaaattagaggacaatcctaaagagcaacatatggcagaggttcacaggcccttgagaagatcttgg |
279 |
Q |
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| T |
34955336 |
cacaaaaatgaaaataaaaaagtgaggacaatcctaaagagcaacacatggcagaggtttacaggcctttgagaagaacttgg |
34955254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 282 - 343
Target Start/End: Complemental strand, 34955058 - 34954997
Alignment:
| Q |
282 |
ccgtatggcagaggtttgtgcagaaaattgaagatctattgtgttgtgtgtgcatgtgttct |
343 |
Q |
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| T |
34955058 |
ccgtatggcagaggtttgtgcagaaaattgaagatctattgtgttgtgtgtgcgtgtgttct |
34954997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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