View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6521_low_8 (Length: 261)

Name: NF6521_low_8
Description: NF6521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6521_low_8
NF6521_low_8
[»] chr2 (1 HSPs)
chr2 (1-247)||(37040996-37041253)
[»] chr1 (2 HSPs)
chr1 (28-93)||(13138768-13138833)
chr1 (28-93)||(24557468-24557533)
[»] chr8 (1 HSPs)
chr8 (46-93)||(13141786-13141833)
[»] chr7 (2 HSPs)
chr7 (15-92)||(34239495-34239571)
chr7 (22-89)||(14244125-14244193)
[»] chr3 (1 HSPs)
chr3 (57-94)||(12488509-12488546)


Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 37040996 - 37041253
Alignment:
Q  1 acaaaaagcaaagaacaaaacaaaggagggggccagaccaaaccaccttaatgagcaacaaacctaaagttaggcatccctaacttgttttgaacnnnnn 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||         
T  37040996 acaaaaagcaaagaacaaaacaaaggagggggctagaccaaacctccttaatgagcaacaaacctaaagttaggcatccctaacttgttttgaacaaaaa 37041095  T
Q  101 nngaagttaggctgctgggaatttgcatcaaaattgatggaagattacaagataaacttaaattagtc-----------acattggtttccctccctaaa 189  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |           |||||||||||||||||||||    
T  37041096 aagaagttaggctgctgggaatttgcatcaaaattgatggaagattacaagataaacttaaattaaccaagtgatctgtacattggtttccctccctaaa 37041195  T
Q  190 tatgtgtgagataataaaattcatatgagcttagcccacttaacttgggaaaatgatg 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37041196 tatgtgtgagataataaaattcatatgagcttagcccacttaacttgggaaaatgatg 37041253  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 13138768 - 13138833
Alignment:
Q  28 gggggccagaccaaaccaccttaatgagcaacaaacctaaagttaggcatccctaacttgttttga 93  Q
    |||||||| |||||||| |||||||| | |||||||||||||||||||||||||||||||||||||    
T  13138768 gggggccaaaccaaacctccttaatgggtaacaaacctaaagttaggcatccctaacttgttttga 13138833  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 24557468 - 24557533
Alignment:
Q  28 gggggccagaccaaaccaccttaatgagcaacaaacctaaagttaggcatccctaacttgttttga 93  Q
    |||||||| |||||||| |||||||| | |||||||||||||||||||||||||||||||||||||    
T  24557468 gggggccaaaccaaacctccttaatgggtaacaaacctaaagttaggcatccctaacttgttttga 24557533  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 46 - 93
Target Start/End: Original strand, 13141786 - 13141833
Alignment:
Q  46 ccttaatgagcaacaaacctaaagttaggcatccctaacttgttttga 93  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||    
T  13141786 ccttaatgagtaacaaacctaaagttaggcatccctaacttgttttga 13141833  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 92
Target Start/End: Original strand, 34239495 - 34239571
Alignment:
Q  15 acaaaacaaaggagggggccagaccaaaccaccttaatgagcaacaaacctaaagttaggcatccctaacttgttttg 92  Q
    |||||| |||||||||| | | |||||||| |||||||||| ||||||||||||||||| ||| ||||||||||||||    
T  34239495 acaaaataaaggaggggtcaa-accaaacctccttaatgagtaacaaacctaaagttagacatacctaacttgttttg 34239571  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 14244125 - 14244193
Alignment:
Q  22 aaaggaggg-ggccagaccaaaccaccttaatgagcaacaaacctaaagttaggcatccctaacttgtt 89  Q
    ||||||||| ||||| |||||||| |||||||||| |||||||||||||||| ||||| ||||||||||    
T  14244125 aaaggagggtggccaaaccaaacctccttaatgagtaacaaacctaaagttaagcatctctaacttgtt 14244193  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 94
Target Start/End: Complemental strand, 12488546 - 12488509
Alignment:
Q  57 aacaaacctaaagttaggcatccctaacttgttttgaa 94  Q
    |||||||||| |||||||||| ||||||||||||||||    
T  12488546 aacaaacctatagttaggcattcctaacttgttttgaa 12488509  T

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