View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6521_low_9 (Length: 254)
Name: NF6521_low_9
Description: NF6521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6521_low_9 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 254
Target Start/End: Complemental strand, 29052804 - 29052568
Alignment:
| Q |
18 |
caatattcccctctctttatctttagattatgatgtaacctagtttatattttttattttggtggatagaataacttattgaactttattaccttttctt |
117 |
Q |
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| T |
29052804 |
caatatttccctctctttatctttagattatgatgtaacctagtttatcttttttattttggtggatagaataacttattgaactttattaccttttcat |
29052705 |
T |
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| Q |
118 |
ataaaagccactggcttagttttgcttaatgaacattgagatatagaattgtcgtctatctatgaaataaattataagcatgcaacatatatgaataaat |
217 |
Q |
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| T |
29052704 |
ataaaagccactggcttagttttgcttaatgcacattgagatatagaattgtcgtctatctatgaaataaattataagcatgcaacatatatgaataaat |
29052605 |
T |
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| Q |
218 |
gagctggattaacatgaagagaccctcatcatcttcc |
254 |
Q |
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| T |
29052604 |
gagctggattaacatgaagagaccctcatcatcttcc |
29052568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 254
Target Start/End: Original strand, 33901232 - 33901412
Alignment:
| Q |
73 |
attttggtggatagaataacttattgaactttattaccttttcttataaaagccac-tggcttagttttgcttaatgaacattgagatatagaattgtcg |
171 |
Q |
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| T |
33901232 |
atttttgtggatagaataaattatcgaacgttattagcttttcataaatatgccacttgggttagttttgcttagcgcacattgaaatatagaattgt-- |
33901329 |
T |
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| Q |
172 |
tctatctatgaaataaattataagcatgcaacatatatgaataaatg-agctggattaacatgaagagaccct-catcatcttcc |
254 |
Q |
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| T |
33901330 |
tc-atgtacgaaat-aattataagcatgcaacagatcggcatgaatgaagctggattaacatgaagagagcctccatcatcttcc |
33901412 |
T |
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