View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6522_high_10 (Length: 236)
Name: NF6522_high_10
Description: NF6522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6522_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 158; Significance: 3e-84; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 20 - 215
Target Start/End: Complemental strand, 32654217 - 32654020
Alignment:
| Q |
20 |
atgtggtggcaggaagttatagacnnnnnnnn-ttccaataaattaatgaaacatccaacaacaccgacaatgtcacgcgcgatagtagagagcaaagtt |
118 |
Q |
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| T |
32654217 |
atgtggtggcaggaagttatagacaaaagaaaattccaataaattaatgaaacatccaacaacaccgacaatgtcacgcgcgatagtagagagcaaagtt |
32654118 |
T |
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| Q |
119 |
attaagacatgattgaaagcttcaactttaaacgatctgttgaagcacatatcaacgattcaag-agagaggctatcgacattccatagctcatgaaa |
215 |
Q |
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| T |
32654117 |
attaagacatgattgaaagcttcaactttaaacgatctgttgaagcacatatcaacgattcaagaagagaggctatcgacattccatagctcatgaaa |
32654020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 54 - 205
Target Start/End: Complemental strand, 32657060 - 32656908
Alignment:
| Q |
54 |
ccaataaattaatgaaacatccaacaacaccgacaatgtcacgcgcgatagtagagagcaaagttattaagacatgattgaaagcttcaactttaaacga |
153 |
Q |
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| T |
32657060 |
ccaataaattaatcaaacattcaataacaacgacactgtcacacgcgatagtatagaccaaaattagtaagaaatggttgaaagtttcaactttaaacga |
32656961 |
T |
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| Q |
154 |
tctgttgaagcacatatcaacgattcaag-agagaggctatcgacattccata |
205 |
Q |
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| T |
32656960 |
tcagttgaagcacaaatcaacgatgcaagaagagaggtcatcgacattccata |
32656908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 32648935 - 32648886
Alignment:
| Q |
54 |
ccaataaattaatgaaacatccaacaacaccgacaatgtcacgcgcgata |
103 |
Q |
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||||||||||||||||||||||||||||| | || |||||||| ||||| |
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| T |
32648935 |
ccaataaattaatgaaacatccaacaacattggcactgtcacgcacgata |
32648886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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