View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6522_high_11 (Length: 228)
Name: NF6522_high_11
Description: NF6522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6522_high_11 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 83 - 228
Target Start/End: Original strand, 2119480 - 2119625
Alignment:
| Q |
83 |
cagttgtcatccttactaactagagtccaaacaaaagtcaacaattagtactatagtttcattactgtcctatctttttgtgatcttgcttgctggcaat |
182 |
Q |
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| T |
2119480 |
cagttgtcatccttactaactagagtccaaacaaaagtcaacaattagtactatagtttcactactgtcctatctttttgtgatattgcttgctggcaat |
2119579 |
T |
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| Q |
183 |
aggcaatgggtcagctcaagaagaaccttttttctgaaaaagttat |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2119580 |
aggcaatgggtcagctcaagaagaaccttttttctgaaaaagttat |
2119625 |
T |
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