View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6522_high_4 (Length: 392)

Name: NF6522_high_4
Description: NF6522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6522_high_4
NF6522_high_4
[»] chr6 (4 HSPs)
chr6 (103-392)||(2119790-2120077)
chr6 (1-101)||(2120804-2120904)
chr6 (158-207)||(14505716-14505765)
chr6 (161-205)||(2366945-2366989)
[»] chr8 (9 HSPs)
chr8 (110-208)||(6388939-6389038)
chr8 (158-205)||(33633404-33633451)
chr8 (158-205)||(20399255-20399302)
chr8 (134-205)||(27058728-27058799)
chr8 (111-205)||(9642742-9642836)
chr8 (158-208)||(32302676-32302726)
chr8 (158-206)||(17468874-17468922)
chr8 (134-174)||(39380010-39380050)
chr8 (158-206)||(45235688-45235736)
[»] chr1 (13 HSPs)
chr1 (134-210)||(45866584-45866660)
chr1 (110-207)||(9983260-9983357)
chr1 (152-205)||(17092376-17092429)
chr1 (115-206)||(24710476-24710567)
chr1 (161-204)||(34673684-34673727)
chr1 (134-208)||(8880007-8880081)
chr1 (157-206)||(18354492-18354541)
chr1 (158-207)||(36187644-36187693)
chr1 (129-202)||(41479570-41479643)
chr1 (158-203)||(44615898-44615943)
chr1 (158-203)||(44792626-44792671)
chr1 (158-206)||(20774250-20774298)
chr1 (158-206)||(28297551-28297599)
[»] chr5 (2 HSPs)
chr5 (134-208)||(6093504-6093578)
chr5 (149-205)||(4582839-4582895)
[»] chr4 (7 HSPs)
chr4 (111-205)||(15987605-15987699)
chr4 (111-205)||(26564456-26564550)
chr4 (152-207)||(39374965-39375019)
chr4 (111-205)||(7608595-7608689)
chr4 (151-205)||(11027697-11027751)
chr4 (163-208)||(6482453-6482498)
chr4 (163-207)||(11123295-11123339)
[»] chr2 (6 HSPs)
chr2 (158-211)||(6028311-6028364)
chr2 (163-206)||(8916356-8916399)
chr2 (111-206)||(10920281-10920376)
chr2 (134-205)||(25209942-25210013)
chr2 (158-211)||(36128530-36128583)
chr2 (158-206)||(13830354-13830402)
[»] chr3 (4 HSPs)
chr3 (151-207)||(41937464-41937520)
chr3 (158-208)||(44638891-44638941)
chr3 (163-207)||(7470204-7470248)
chr3 (134-202)||(19111358-19111426)
[»] scaffold0036 (1 HSPs)
scaffold0036 (158-207)||(33012-33061)
[»] scaffold0022 (1 HSPs)
scaffold0022 (164-205)||(90216-90257)
[»] scaffold0007 (1 HSPs)
scaffold0007 (158-207)||(199215-199264)
[»] chr7 (4 HSPs)
chr7 (163-208)||(5432463-5432508)
chr7 (163-208)||(25905249-25905294)
chr7 (111-208)||(45886140-45886237)
chr7 (161-205)||(3920162-3920206)


Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 103 - 392
Target Start/End: Complemental strand, 2120077 - 2119790
Alignment:
Q  103 attctcactggatataggtaggatatcagacaagtatatgagagcagagtatgaagacgaggaatgtaaaacccgtccgcatcccgccacattgccatgc 202  Q
    |||| |||||||||||| ||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  2120077 attcccactggatatagataggataacagacaaatatatgagagtagagtatgaagacgaggaatgtaaaacccttccgcattccgccacattgccatgc 2119978  T
Q  203 ctaattatattactagtctttgtattaaactcttattttaattcattttttaatatccaatttcgtttaacaccaatattcaataggggggaatcgaaac 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2119977 ctaattatattactagtctttgtattaaactcttattttaattcattttttaatatccaatttcgtttaacaccaatattcaataggggggaatcgaaac 2119878  T
Q  303 acaaacacacagttcattttgttttcaatttatttggttggcataagttgtctcccaatcccaatggccaatttgatcttttcatttttt 392  Q
    |||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2119877 acaaa--cacagttcattttattttcaatttatttggttggcataagttgtctcccaatcccaatggccaatttgatcttttcatttttt 2119790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 2120904 - 2120804
Alignment:
Q  1 tggtaattgctcttacatttctcaaataaggtatagttcatgtgctttcatgtgcaatgtccataactgagctggaataattgaattgtccgcggacatg 100  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||    
T  2120904 tggtaattgttcttacatttctcaaataaggtatagttcatgtgatttcatgtgcaatgttcataactgagctggaataattgaatggtccgcgggcatg 2120805  T
Q  101 t 101  Q
    |    
T  2120804 t 2120804  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 14505765 - 14505716
Alignment:
Q  158 gacgaggaatgtaaaacccgtccgcatcccgccacattgccatgcctaat 207  Q
    ||||||||||||||||||||||| || | ||||  |||||||||||||||    
T  14505765 gacgaggaatgtaaaacccgtccccacctcgcccaattgccatgcctaat 14505716  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 2366989 - 2366945
Alignment:
Q  161 gaggaatgtaaaacccgtccgcatcccgccacattgccatgccta 205  Q
    |||||| ||||||||||||| || |||||| ||||||||||||||    
T  2366989 gaggaaggtaaaacccgtccccaccccgccccattgccatgccta 2366945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 208
Target Start/End: Original strand, 6388939 - 6389038
Alignment:
Q  110 ctggatataggtaggatatcagacaagtatatgagagcagagtatgaagacgaggaatgtaaaacccgtccgca-tcccgccacattgccatgcctaatt 208  Q
    |||||||| |||||| || |||  ||||||||||||| ||||||||  |||| |||| ||||||||||||| ||  |||||| |||||||||||||||||    
T  6388939 ctggatatgggtagggtaacaggtaagtatatgagagtagagtatggggacggggaaggtaaaacccgtccccacccccgcctcattgccatgcctaatt 6389038  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 158 - 205
Target Start/End: Original strand, 33633404 - 33633451
Alignment:
Q  158 gacgaggaatgtaaaacccgtccgcatcccgccacattgccatgccta 205  Q
    ||||||||| ||||||||||||| ||||||||| ||||||||||||||    
T  33633404 gacgaggaaggtaaaacccgtccccatcccgccccattgccatgccta 33633451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 158 - 205
Target Start/End: Complemental strand, 20399302 - 20399255
Alignment:
Q  158 gacgaggaatgtaaaacccgtccgcatcccgccacattgccatgccta 205  Q
    ||||||||||||||||||| ||| || |||||| ||||||||||||||    
T  20399302 gacgaggaatgtaaaacccttccccaccccgccccattgccatgccta 20399255  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 134 - 205
Target Start/End: Original strand, 27058728 - 27058799
Alignment:
Q  134 aagtatatgagagcagagtatgaagacgaggaatgtaaaacccgtccgcatcccgccacattgccatgccta 205  Q
    ||||||||||||  ||||||||  |||| || | ||||||||||||| || |||||| ||||||||||||||    
T  27058728 aagtatatgagaatagagtatggggacgggggaggtaaaacccgtccccaccccgccccattgccatgccta 27058799  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 205
Target Start/End: Original strand, 9642742 - 9642836
Alignment:
Q  111 tggatataggtaggatatcagacaagtatatgagagcagagtatgaagacgaggaatgtaaaacccgtccgcatcccgccacattgccatgccta 205  Q
    ||||||| ||||||||| | |  ||||||||||||  ||||||||  || | |||| ||||||||||||| || ||| || ||||||||||||||    
T  9642742 tggatatgggtaggataacgggtaagtatatgagaatagagtatggggatggggaaggtaaaacccgtccccaccccaccccattgccatgccta 9642836  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 32302726 - 32302676
Alignment:
Q  158 gacgaggaatgtaaaacccgtccgcatcccgccacattgccatgcctaatt 208  Q
    |||| |||| ||||||||||||| || |||||| |||||||||||||||||    
T  32302726 gacggggaaggtaaaacccgtccccaccccgccccattgccatgcctaatt 32302676  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 17468922 - 17468874
Alignment:
Q  158 gacgaggaatgtaaaacccgtccgcatcccgccacattgccatgcctaa 206  Q
    |||| |||||||||||| ||||| || |||||| |||||||||||||||    
T  17468922 gacggggaatgtaaaactcgtcctcaccccgccccattgccatgcctaa 17468874  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 39380010 - 39380050
Alignment:
Q  134 aagtatatgagagcagagtatgaagacgaggaatgtaaaac 174  Q
    |||||| | |||||||||||||| |||||||||||||||||    
T  39380010 aagtatttaagagcagagtatgaggacgaggaatgtaaaac 39380050  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 45235736 - 45235688
Alignment:
Q  158 gacgaggaatgtaaaacccgtccgcatcccgccacattgccatgcctaa 206  Q
    |||| |||| ||||||||||||| || |||||| |||||||||||||||    
T  45235736 gacggggaaggtaaaacccgtccccaccccgccccattgccatgcctaa 45235688  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 134 - 210
Target Start/End: Original strand, 45866584 - 45866660
Alignment:
Q  134 aagtatatgagagcagagtatgaagacgaggaatgtaaaacccgtccgcatcccgccacattgccatgcctaattat 210  Q
    ||||||||||||   |||||||| |||| |||| ||||||| ||||| || |||||| |||||||||||||||||||    
T  45866584 aagtatatgagaatcgagtatgaggacggggaaggtaaaacacgtccccaccccgccccattgccatgcctaattat 45866660  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 110 - 207
Target Start/End: Original strand, 9983260 - 9983357
Alignment:
Q  110 ctggatataggtaggatatcagacaagtatatgagagcagagtatgaagacgaggaatgtaaaacccgtccgcatcccgccacattgccatgcctaat 207  Q
    |||||||| |||||| || |||  |||||| |||||   | ||||| ||||| |||||||||||| ||| | ||||||||| ||||||||||||||||    
T  9983260 ctggatatgggtagggtaacaggtaagtatgtgagaatcgggtatggagacggggaatgtaaaactcgttcccatcccgccccattgccatgcctaat 9983357  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 17092376 - 17092429
Alignment:
Q  152 tatgaagacgaggaatgtaaaacccgtccgcatcccgccacattgccatgccta 205  Q
    ||||| ||||||||| ||||||||||||| || |||||| ||||||||||||||    
T  17092376 tatgaggacgaggaaggtaaaacccgtccccaccccgccccattgccatgccta 17092429  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 115 - 206
Target Start/End: Complemental strand, 24710567 - 24710476
Alignment:
Q  115 tataggtaggatatcagacaagtatatgagagcagagtatgaagacgaggaatgtaaaacccgtccgcatcccgccacattgccatgcctaa 206  Q
    |||||||||| || |||  ||||||||||||   | ||||| ||||| |||| ||||||||||||| || ||||||  ||||||||||||||    
T  24710567 tataggtagggtaacaggtaagtatatgagaatcgggtatggagacggggaaggtaaaacccgtccccaccccgccctattgccatgcctaa 24710476  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 34673684 - 34673727
Alignment:
Q  161 gaggaatgtaaaacccgtccgcatcccgccacattgccatgcct 204  Q
    |||||||||||||||||||| || |||||| |||||||||||||    
T  34673684 gaggaatgtaaaacccgtccccaccccgccccattgccatgcct 34673727  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 208
Target Start/End: Complemental strand, 8880081 - 8880007
Alignment:
Q  134 aagtatatgagagcagagtatgaagacgaggaatgtaaaacccgtccgcatcccgccacattgccatgcctaatt 208  Q
    ||||||||  ||| || |||||| |||| |||  ||||||||||||| ||||||||| |||| ||||||||||||    
T  8880081 aagtatataggagtagggtatgaggacggggacggtaaaacccgtccccatcccgccccatttccatgcctaatt 8880007  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 18354492 - 18354541
Alignment:
Q  157 agacgaggaatgtaaaacccgtccgcatcccgccacattgccatgcctaa 206  Q
    ||||| |||| ||||||||||||| || |||||| |||||||||||||||    
T  18354492 agacggggaaggtaaaacccgtccccaccccgccccattgccatgcctaa 18354541  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 36187644 - 36187693
Alignment:
Q  158 gacgaggaatgtaaaacccgtccgcatcccgccacattgccatgcctaat 207  Q
    |||| |||| ||||||||||||| || |||||| ||||||||||||||||    
T  36187644 gacggggaaggtaaaacccgtccccaccccgccccattgccatgcctaat 36187693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 202
Target Start/End: Original strand, 41479570 - 41479643
Alignment:
Q  129 cagacaagtatatgagagcagagtatgaagacgaggaatgtaaaacccgtccgcatcccgccacattgccatgc 202  Q
    |||| ||||||||||||| ||||||||  ||||||||| || |||||| ||| || ||| || |||||||||||    
T  41479570 cagataagtatatgagagtagagtatggggacgaggaaggtgaaacccatccccaccccaccccattgccatgc 41479643  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 44615898 - 44615943
Alignment:
Q  158 gacgaggaatgtaaaacccgtccgcatcccgccacattgccatgcc 203  Q
    |||| |||||||||||||||||| || |||||| ||||||||||||    
T  44615898 gacggggaatgtaaaacccgtccccaccccgccccattgccatgcc 44615943  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 44792671 - 44792626
Alignment:
Q  158 gacgaggaatgtaaaacccgtccgcatcccgccacattgccatgcc 203  Q
    |||| |||||||||||||||||| || |||||| ||||||||||||    
T  44792671 gacggggaatgtaaaacccgtccccaccccgccccattgccatgcc 44792626  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 20774298 - 20774250
Alignment:
Q  158 gacgaggaatgtaaaacccgtccgcatcccgccacattgccatgcctaa 206  Q
    |||| |||| ||||||||||||| || |||||| |||||||||||||||    
T  20774298 gacggggaaggtaaaacccgtccccaccccgccccattgccatgcctaa 20774250  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 28297599 - 28297551
Alignment:
Q  158 gacgaggaatgtaaaacccgtccgcatcccgccacattgccatgcctaa 206  Q
    |||| |||| ||||||||||||| || |||||| |||||||||||||||    
T  28297599 gacggggaaggtaaaacccgtccccaccccgcctcattgccatgcctaa 28297551  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 208
Target Start/End: Original strand, 6093504 - 6093578
Alignment:
Q  134 aagtatatgagagcagagtatgaagacgaggaatgtaaaacccgtccgcatcccgccacattgccatgcctaatt 208  Q
    ||||||||||||   | ||||||||| | ||||  |||||||||||| ||||||||| |||||||||||||||||    
T  6093504 aagtatatgagaatcgggtatgaagatggggaagataaaacccgtccccatcccgccccattgccatgcctaatt 6093578  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 4582895 - 4582839
Alignment:
Q  149 gagtatgaagacgaggaatgtaaaacccgtccgcatcccgccacattgccatgccta 205  Q
    ||||||| ||||| |||| ||||||||||||| || |||||| ||||||||||||||    
T  4582895 gagtatggagacggggaaggtaaaacccgtccccaccccgccccattgccatgccta 4582839  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 205
Target Start/End: Original strand, 15987605 - 15987699
Alignment:
Q  111 tggatataggtaggatatcagacaagtatatgagagcagagtatgaagacgaggaatgtaaaacccgtccgcatcccgccacattgccatgccta 205  Q
    ||||||| |||||| || |||  ||||||||||||   |||||||  ||||||||| ||||||| ||||| || |||||| ||||||||||||||    
T  15987605 tggatatgggtagggtaacaggtaagtatatgagaatcgagtatggggacgaggaaggtaaaactcgtccccaccccgccccattgccatgccta 15987699  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 111 - 205
Target Start/End: Complemental strand, 26564550 - 26564456
Alignment:
Q  111 tggatataggtaggatatcagacaagtatatgagag-cagagtatgaagacgaggaatgtaaaacccgtccgcatcccgccacattgccatgccta 205  Q
    ||||||| |||||| || |||  ||||||||||||  ||| |||||| |||| | |||||||||||||||| || |||||| ||||||||||||||    
T  26564550 tggatatgggtagggtaacaggtaagtatatgagaatcag-gtatgaggacgggaaatgtaaaacccgtccccaccccgccccattgccatgccta 26564456  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 152 - 207
Target Start/End: Complemental strand, 39375019 - 39374965
Alignment:
Q  152 tatgaagacgaggaatgtaaaacccgtccgcatcccgccacattgccatgcctaat 207  Q
    |||||||||| |||||||||||||||||| || |||||| ||||| ||||||||||    
T  39375019 tatgaagacg-ggaatgtaaaacccgtccccaccccgcctcattgtcatgcctaat 39374965  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 205
Target Start/End: Complemental strand, 7608689 - 7608595
Alignment:
Q  111 tggatataggtaggatatcagacaagtatatgagagcagagtatgaagacgaggaatgtaaaacccgtccgcatcccgccacattgccatgccta 205  Q
    ||||||| |||||| || |||  ||||||||||||   | |||||  |||| |||| ||||||||||||| || |||||| ||||||||||||||    
T  7608689 tggatatgggtagggtaacaggtaagtatatgagaatcgggtatggggacggggaaggtaaaacccgtccccaccccgccccattgccatgccta 7608595  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 205
Target Start/End: Complemental strand, 11027751 - 11027697
Alignment:
Q  151 gtatgaagacgaggaatgtaaaacccgtccgcatcccgccacattgccatgccta 205  Q
    |||||| |||| |||| ||||||||||||| || |||||| ||||||||||||||    
T  11027751 gtatgaggacggggaaggtaaaacccgtccccaccccgccccattgccatgccta 11027697  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 6482453 - 6482498
Alignment:
Q  163 ggaatgtaaaacccgtccgcatcccgccacattgccatgcctaatt 208  Q
    |||||||||||||||||| || |||||| |||| ||||||||||||    
T  6482453 ggaatgtaaaacccgtccccaccccgccccattaccatgcctaatt 6482498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 11123295 - 11123339
Alignment:
Q  163 ggaatgtaaaacccgtccgcatcccgccacattgccatgcctaat 207  Q
    |||| ||||||||||||| || |||||| ||||||||||||||||    
T  11123295 ggaaggtaaaacccgtccccaccccgccccattgccatgcctaat 11123339  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 6028311 - 6028364
Alignment:
Q  158 gacgaggaatgtaaaacccgtccgcatcccgccacattgccatgcctaattata 211  Q
    |||| |||||||||||||||||| || |||||| || |||||||||||||||||    
T  6028311 gacggggaatgtaaaacccgtccccaccccgccccaatgccatgcctaattata 6028364  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 163 - 206
Target Start/End: Original strand, 8916356 - 8916399
Alignment:
Q  163 ggaatgtaaaacccgtccgcatcccgccacattgccatgcctaa 206  Q
    |||||||||||||||||| || |||||| |||||||||||||||    
T  8916356 ggaatgtaaaacccgtccccaccccgccccattgccatgcctaa 8916399  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 111 - 206
Target Start/End: Complemental strand, 10920376 - 10920281
Alignment:
Q  111 tggatataggtaggatatcagacaagtatatgagagcagagtatgaagacgaggaatgtaaaacccgtccgcatcccgccacattgccatgcctaa 206  Q
    ||||||| |||||| || |||  ||||||||||||  || ||||| ||| | ||||  |||||||||||| || |||||| |||||||||||||||    
T  10920376 tggatatgggtagggtaacaggtaagtatatgagaatagggtatggagatggggaagataaaacccgtccccaccccgccccattgccatgcctaa 10920281  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 134 - 205
Target Start/End: Complemental strand, 25210013 - 25209942
Alignment:
Q  134 aagtatatgagagcagagtatgaagacgaggaatgtaaaacccgtccgcatcccgccacattgccatgccta 205  Q
    |||||||||| || || |||||| ||||||||| ||||||| ||||| || ||| || ||||||||||||||    
T  25210013 aagtatatgaaagtagggtatgaggacgaggaaggtaaaactcgtcctcaccccaccccattgccatgccta 25209942  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 36128530 - 36128583
Alignment:
Q  158 gacgaggaatgtaaaacccgtccgcatcccgccacattgccatgcctaattata 211  Q
    |||| |||| ||||||||||||| || |||||| |||||||||||||| |||||    
T  36128530 gacggggaaggtaaaacccgtccccaccccgccccattgccatgcctacttata 36128583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 13830402 - 13830354
Alignment:
Q  158 gacgaggaatgtaaaacccgtccgcatcccgccacattgccatgcctaa 206  Q
    |||| |||| ||||||||||||| || |||||| |||||||||||||||    
T  13830402 gacggggaaggtaaaacccgtccccaccccgccccattgccatgcctaa 13830354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 41937464 - 41937520
Alignment:
Q  151 gtatgaagacgaggaatgtaaaacccgtccgcatcccgccacattgccatgcctaat 207  Q
    ||||| ||||| |||||||||||||||||| || ||| || ||||||||||||||||    
T  41937464 gtatggagacggggaatgtaaaacccgtccccaccccaccccattgccatgcctaat 41937520  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 44638941 - 44638891
Alignment:
Q  158 gacgaggaatgtaaaacccgtccgcatcccgccacattgccatgcctaatt 208  Q
    |||| |||| ||||||||||||| || |||||||||||| |||||||||||    
T  44638941 gacggggaaggtaaaacccgtccccaccccgccacattgtcatgcctaatt 44638891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 7470204 - 7470248
Alignment:
Q  163 ggaatgtaaaacccgtccgcatcccgccacattgccatgcctaat 207  Q
    |||| ||||||||||||| || |||||| ||||||||||||||||    
T  7470204 ggaaggtaaaacccgtccccaccccgccccattgccatgcctaat 7470248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 19111426 - 19111358
Alignment:
Q  134 aagtatatgagagcagagtatgaagacgaggaatgtaaaacccgtccgcatcccgccacattgccatgc 202  Q
    |||||||||||| | | |||||  ||||||||||||||||||||||| |  | |||| |||||||||||    
T  19111426 aagtatatgagaaccgggtatggggacgaggaatgtaaaacccgtcccctccacgccccattgccatgc 19111358  T

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Target: scaffold0036 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 33061 - 33012
Alignment:
Q  158 gacgaggaatgtaaaacccgtccgcatcccgccacattgccatgcctaat 207  Q
    |||| ||||||||||||| |||| || |||||| ||||||||||||||||    
T  33061 gacggggaatgtaaaacctgtccccaccccgccccattgccatgcctaat 33012  T

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Target: scaffold0022 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 205
Target Start/End: Complemental strand, 90257 - 90216
Alignment:
Q  164 gaatgtaaaacccgtccgcatcccgccacattgccatgccta 205  Q
    ||||||||||||||||| |||||| || ||||||||||||||    
T  90257 gaatgtaaaacccgtccccatcccaccccattgccatgccta 90216  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 199215 - 199264
Alignment:
Q  158 gacgaggaatgtaaaacccgtccgcatcccgccacattgccatgcctaat 207  Q
    |||| |||||||||||||||||| || |||||| |||| |||||||||||    
T  199215 gacggggaatgtaaaacccgtccccaccccgccccattaccatgcctaat 199264  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 5432463 - 5432508
Alignment:
Q  163 ggaatgtaaaacccgtccgcatcccgccacattgccatgcctaatt 208  Q
    |||| ||||||||||||| || |||||| |||||||||||||||||    
T  5432463 ggaaggtaaaacccgtccacaccccgccccattgccatgcctaatt 5432508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 25905294 - 25905249
Alignment:
Q  163 ggaatgtaaaacccgtccgcatcccgccacattgccatgcctaatt 208  Q
    |||| ||||||||||||| || |||||| |||||||||||||||||    
T  25905294 ggaaggtaaaacccgtccccaccccgccccattgccatgcctaatt 25905249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 208
Target Start/End: Original strand, 45886140 - 45886237
Alignment:
Q  111 tggatataggtaggatatcagacaagtatatgagagcagagtatgaagacgaggaatgtaaaacccgtccgcatcccgccacattgccatgcctaatt 208  Q
    ||||||| |||||| || |||  ||||||||||||   | ||||| ||||| |||| ||||||||| ||  || |||||| |||||||||||||||||    
T  45886140 tggatatgggtagggtaacaggtaagtatatgagaattgggtatggagacggggaaggtaaaacccatctccaccccgccccattgccatgcctaatt 45886237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 3920206 - 3920162
Alignment:
Q  161 gaggaatgtaaaacccgtccgcatcccgccacattgccatgccta 205  Q
    |||||||||||||||| ||| || |||||| ||||||||||||||    
T  3920206 gaggaatgtaaaacccatccccaccccgccccattgccatgccta 3920162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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