View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6522_low_1 (Length: 515)

Name: NF6522_low_1
Description: NF6522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6522_low_1
NF6522_low_1
[»] chr1 (10 HSPs)
chr1 (1-515)||(8421333-8421848)
chr1 (1-162)||(338198-338358)
chr1 (171-276)||(338058-338164)
chr1 (171-295)||(43407901-43408027)
chr1 (32-274)||(26317178-26317426)
chr1 (189-318)||(21264753-21264884)
chr1 (178-247)||(36386859-36386929)
chr1 (27-144)||(43407771-43407888)
chr1 (106-162)||(36386764-36386820)
chr1 (362-446)||(8311366-8311450)
[»] chr7 (10 HSPs)
chr7 (171-502)||(49170422-49170754)
chr7 (1-165)||(49170227-49170391)
chr7 (171-501)||(12196711-12197038)
chr7 (9-162)||(12911664-12911815)
chr7 (171-288)||(12911849-12911966)
chr7 (171-318)||(10289325-10289474)
chr7 (177-318)||(48654379-48654522)
chr7 (27-144)||(10289195-10289312)
chr7 (177-264)||(22077644-22077732)
chr7 (9-59)||(22077858-22077908)
[»] chr4 (6 HSPs)
chr4 (1-165)||(55162272-55162436)
chr4 (1-162)||(40459044-40459205)
chr4 (171-295)||(40458885-40459010)
chr4 (171-281)||(55162130-55162241)
chr4 (177-276)||(69249-69349)
chr4 (26-148)||(41868770-41868898)
[»] chr5 (8 HSPs)
chr5 (1-150)||(40691007-40691157)
chr5 (9-159)||(30909884-30910032)
chr5 (171-264)||(40687556-40687649)
chr5 (173-249)||(30909772-30909845)
chr5 (177-264)||(38000856-38000944)
chr5 (9-102)||(38001023-38001115)
chr5 (177-233)||(6308666-6308722)
chr5 (179-247)||(27026649-27026718)
[»] chr2 (20 HSPs)
chr2 (1-274)||(40729350-40729628)
chr2 (1-162)||(36732116-36732280)
chr2 (26-162)||(18292694-18292830)
chr2 (1-162)||(40447571-40447731)
chr2 (264-462)||(22403559-22403757)
chr2 (239-356)||(41340857-41340974)
chr2 (171-264)||(18292864-18292957)
chr2 (171-276)||(40447431-40447537)
chr2 (189-318)||(32735455-32735586)
chr2 (26-144)||(41340674-41340792)
chr2 (171-264)||(36732462-36732552)
chr2 (306-425)||(36732564-36732683)
chr2 (117-162)||(36732321-36732366)
chr2 (189-277)||(1193596-1193685)
chr2 (177-263)||(44788527-44788614)
chr2 (177-249)||(29270661-29270734)
chr2 (440-489)||(41341000-41341049)
chr2 (177-274)||(28267695-28267793)
chr2 (171-209)||(36732400-36732437)
chr2 (21-70)||(12774861-12774910)
[»] chr3 (11 HSPs)
chr3 (395-485)||(11968236-11968326)
chr3 (171-318)||(7337228-7337377)
chr3 (234-325)||(11968089-11968180)
chr3 (171-277)||(43278381-43278488)
chr3 (26-144)||(43278250-43278368)
chr3 (27-144)||(7337098-7337215)
chr3 (308-391)||(16975129-16975212)
chr3 (182-245)||(8730831-8730895)
chr3 (182-245)||(9082718-9082782)
chr3 (177-247)||(9104202-9104273)
chr3 (177-274)||(17542816-17542914)
[»] chr8 (7 HSPs)
chr8 (257-351)||(35839024-35839118)
chr8 (171-284)||(44436055-44436168)
chr8 (362-502)||(24423000-24423140)
chr8 (177-272)||(40841556-40841652)
chr8 (177-293)||(22816490-22816608)
chr8 (177-274)||(41958486-41958584)
chr8 (13-137)||(41958319-41958442)
[»] scaffold0413 (2 HSPs)
scaffold0413 (189-353)||(8759-8927)
scaffold0413 (428-457)||(8716-8745)
[»] scaffold0041 (1 HSPs)
scaffold0041 (26-95)||(33280-33349)
[»] chr6 (3 HSPs)
chr6 (257-371)||(10751658-10751772)
chr6 (257-318)||(13777332-13777393)
chr6 (177-273)||(24992418-24992514)
[»] scaffold0013 (1 HSPs)
scaffold0013 (189-299)||(243187-243299)


Alignment Details
Target: chr1 (Bit Score: 436; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 515
Target Start/End: Complemental strand, 8421848 - 8421333
Alignment:
Q  1 tctttctcttctttaattcatcaacaaaatgtaacatttcttttccaagatcacaaaaacatataaagcacattaatataaaatatatcaattcacacca 100  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  8421848 tctttctcttctttaattaatcaaaaaaatgtaacatttcttttccaacatcacaagaacatataaagcgcattaatataaaatatatcaattcacacca 8421749  T
Q  101 cattatcatacacaactttcatataaaacataattaagaataatcactcataattaataatactctacttaatacgttttaattatttttctttttaaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8421748 cattatcatacacaactttcatataaaacataattaagaataatcactcataattaataatactctacttaatacgttttaattatttttctttttaaaa 8421649  T
Q  201 gacaagaattgctacttctacttaataacacagcctagcacttagtatgtacatat-gggaaaaagcctttacctcgagagcttttctttctagtcgaac 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||| ||||||||||||||||||||||||    
T  8421648 gacaagaattgctacttctacttaataacacagcctagcacttagtatgtacgtatggggaaaaagcccttaccttgagagcttttctttctagtcgaac 8421549  T
Q  300 tctaaaccacctcaaactcacagctacggtgaagacacggtttctctcactccaagagttagtttgacgatcagaccgttgaaatcgaagaaccgcatgt 399  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||| | |||||||||||||||||||||||||||    
T  8421548 tctaaaccacctcaaactcacagctacggtgaagacatggtttctctcagtccaggagttagtttgacgaccggaccgttgaaatcgaagaaccgcatgt 8421449  T
Q  400 tgggaacacgctgtccaaaaattagcttaatcggacggtgaacgaaggcgtagtcgcaattctacgatgacatgtttgaggaaaacgaaattggcttcaa 499  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  8421448 tgggaacacgctgtccaaaaatgagctcaatcggacggtgaacgaaggcgtaatcgcaattctacgatgacatgtttgaggaaaacgaaaatggcttcaa 8421349  T
Q  500 tgaatgtagagattga 515  Q
    ||||| ||||||||||    
T  8421348 tgaatttagagattga 8421333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 338358 - 338198
Alignment:
Q  1 tctttctcttctttaattcatcaacaaaatgtaacatttcttttccaagatcacaaaaacatataaagcacattaatataaaatatatcaattcacacca 100  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||   ||||||| ||||||||||| | ||||||||||||||||||| |||||||    
T  338358 tctttttcttctttaattcatcaagaaaatgtaacatttcttttccaacgccacaaaa-catataaagcataataatataaaatatatcaatccacacca 338260  T
Q  101 cattatcatacacaactttcatataaaacataattaagaataatcactcataattaataata 162  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  338259 cattatcatacactactttcatataaaacataattaagaataatcactcataattaataata 338198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 171 - 276
Target Start/End: Complemental strand, 338164 - 338058
Alignment:
Q  171 aatacgttttaattatttttctttttaaaagacaagaattgctacttctacttaataacacagcctagcacttagtatgtacatat-gggaaaaagcctt 269  Q
    |||||||||||| |||||||||||||| |||||||||||| |||| |||||||||||||| || ||||||||||||||| || ||| ||||||||||| |    
T  338164 aatacgttttaactatttttctttttagaagacaagaattactacctctacttaataacatagtctagcacttagtatggacgtatggggaaaaagccct 338065  T
Q  270 tacctcg 276  Q
    |||||||    
T  338064 tacctcg 338058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 171 - 295
Target Start/End: Original strand, 43407901 - 43408027
Alignment:
Q  171 aatacgttttaattatttttctttttaaaagacaagaattgctacttctacttaataacacag-cctagcacttagtatgtacatatggg-aaaaagcct 268  Q
    ||||| |||||||| |||||||||||| |||||||| ||| ||||   |||||||| |||||| |||||||||||||||| || |||||| ||||||||     
T  43407901 aatacattttaattgtttttctttttagaagacaagcatttctaccattacttaatgacacagtcctagcacttagtatggacgtatggggaaaaagccc 43408000  T
Q  269 ttacctcgagagcttttctttctagtc 295  Q
    |||||||||||||||||||| ||||||    
T  43408001 ttacctcgagagcttttcttcctagtc 43408027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 32 - 274
Target Start/End: Complemental strand, 26317426 - 26317178
Alignment:
Q  32 taacatttcttttccaagatcacaaaaacatataaagcacattaatataaaatatatcaattcacaccacattatcatacacaactttcatataaaacat 131  Q
    |||||||||||| |||| |||||||| | ||||||| || | | | ||||||||||||| |  ||| |||||| |||||||||| | |||||||| |||     
T  26317426 taacatttctttcccaacatcacaaagatatataaaacataatcacataaaatatatcattctacatcacattttcatacacaaatatcatataatacaa 26317327  T
Q  132 aattaagaataatcactcata------attaa-taatactctacttaatacgttttaattatttttctttttaaaagacaagaattgctacttctactta 224  Q
    |||||||||||| ||||  ||      ||||| |  ||||||    ||||| |||||| |||||||||| |||||||||||||||||||||  ||| |||    
T  26317326 aattaagaataaccacttttagaaaagattaaattttactctca--aatacattttaactatttttcttcttaaaagacaagaattgctaccactattta 26317229  T
Q  225 ataacacag-cctagcacttagtatgtacatatgggaaaaagcctttacct 274  Q
    ||| ||||| ||||||||||| |||| || | |||||||||||| ||||||    
T  26317228 ataccacagccctagcacttattatggacgtttgggaaaaagcccttacct 26317178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 189 - 318
Target Start/End: Original strand, 21264753 - 21264884
Alignment:
Q  189 ttctttttaaaagacaagaattgctacttctacttaataacacagcc-tagcacttagtatgtacatatggg-aaaaagcctttacctcgagagcttttc 286  Q
    ||||||| |||||||||||||||||||  ||  ||||| ||| |||| |||||||||||| | || |||||| |||||||| ||||||||  |||||| |    
T  21264753 ttcttttcaaaagacaagaattgctacccctgtttaatcacaaagccctagcacttagtaagaacgtatggggaaaaagcccttacctcgtaagctttcc 21264852  T
Q  287 tttctagtcgaactctaaaccacctcaaactc 318  Q
    || |||| | ||||||||||||||||||||||    
T  21264853 ttcctagccaaactctaaaccacctcaaactc 21264884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 178 - 247
Target Start/End: Original strand, 36386859 - 36386929
Alignment:
Q  178 tttaattatttttctttttaaaagacaagaattgctacttctacttaataacacag-cctagcacttagta 247  Q
    ||||||||||||||||||||||||||||||||||||||  ||| |||||||||||| |||| |||||||||    
T  36386859 tttaattatttttctttttaaaagacaagaattgctaccactatttaataacacagtcctaacacttagta 36386929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 27 - 144
Target Start/End: Original strand, 43407771 - 43407888
Alignment:
Q  27 aaatgtaacatttcttttccaagatcacaaaaacatataaagcacattaatataaaatatatcaattcacaccacattatcatacacaactttcatataa 126  Q
    |||| |||||| ||||| || | ||||||| ||||||| ||||| | |||||||||| | | || |||||| |||||   ||||||||||||||||||||    
T  43407771 aaatctaacatctctttccctacatcacaagaacatatcaagcataataatataaaacaaaccagttcacatcacatccacatacacaactttcatataa 43407870  T
Q  127 aacataattaagaataat 144  Q
    ||||||||||| ||||||    
T  43407871 aacataattaaaaataat 43407888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 106 - 162
Target Start/End: Original strand, 36386764 - 36386820
Alignment:
Q  106 tcatacacaactttcatataaaacataattaagaataatcactcataattaataata 162  Q
    ||||||| || | |||||||||||||||||||||||||||||||||| |||||||||    
T  36386764 tcatacataaatatcatataaaacataattaagaataatcactcatagttaataata 36386820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 446
Target Start/End: Original strand, 8311366 - 8311450
Alignment:
Q  362 tttgacgatcagaccgttgaaatcgaagaaccgcatgttgggaacacgctgtccaaaaattagcttaatcggacggtgaacgaag 446  Q
    |||||||||  ||||||||||| | ||||||| | || |||||||| ||| |||||||||||| |  || | |||||||||||||    
T  8311366 tttgacgattggaccgttgaaaacaaagaaccacgtggtgggaacatgctatccaaaaattagttcgattgaacggtgaacgaag 8311450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 171 - 502
Target Start/End: Original strand, 49170422 - 49170754
Alignment:
Q  171 aatacgttttaattatttttctttttaaaagacaagaattgctacttctacttaataacacagcctagcacttagtatgtacatatggg-aaaaagcctt 269  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| || |||||| ||||| || |    
T  49170422 aataggttttaattatttttctttttaaaagacaagaattgctacttctacttaataacacagcgtaacacttagtatggacgtatggggaaaaaaccct 49170521  T
Q  270 tacctcgagagcttttctttctagtcgaactctaaaccacctcaaactcacagctacggtgaagacacggtttctctcactccaagagttagtttgacga 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||    
T  49170522 tacctcgagagcttttctttctagtcgaactctaaaccacctcaaactcacagctacggtgaagacacgttttctctcactccaggagatagtttgacga 49170621  T
Q  370 tcagaccgttgaaatcgaagaaccgcatgttgggaacacgctgtccaaaaattagcttaatcggacggtgaacgaaggcgtagtcgcaattctacgatga 469  Q
    || |||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  49170622 tcggaccgttgaaattgaagaaccgcatgttgggaacacgctttccaaaaattagctcaatcggacggtgaacgaagccgtagtcgcaattctacgatga 49170721  T
Q  470 catgtttgaggaaaacgaaattggcttcaatga 502  Q
    |||||||||||||||||||| ||||||||||||    
T  49170722 catgtttgaggaaaacgaaaatggcttcaatga 49170754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 49170227 - 49170391
Alignment:
Q  1 tctttctcttctttaattcatcaacaaaatgtaacatttcttttccaagatcacaaaaacatataaagcacattaatataaaatatatcaattcacacca 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  49170227 tctttctcttctttaattcatcaaaaaaatgtaacatttcttttccaacatcacaaaaacatataaagcgcattaatataaaatatatcaattcacacca 49170326  T
Q  101 cattatcatacacaactttcatataaaacataattaagaataatcactcataattaataatactc 165  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49170327 tattatcatacacaactttcatataaaacataattaagaataatcactcataattaataatactc 49170391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 171 - 501
Target Start/End: Original strand, 12196711 - 12197038
Alignment:
Q  171 aatacgttttaattatttttctttttaaaagacaagaattgctacttctacttaataacacag-cctagcacttagtatgtacatatggg-aaaaagcct 268  Q
    ||||| |||||||||||||||||||||||||||||||||||||||  ||| ||||||||| || ||| |||||||||| | |  |||||| ||||||||     
T  12196711 aatacattttaattatttttctttttaaaagacaagaattgctaccactatttaataacatagtccttgcacttagtaagaatgtatggggaaaaagccc 12196810  T
Q  269 ttacctcgagagcttttctttctagtcgaactctaaaccacctcaaactcacagctacggtgaagacacggtttctctcactccaagagttagtttgacg 368  Q
    |||||| |  || ||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| || ||| |||||||    
T  12196811 ttaccttgtaagtttttcttcctagccgaactctaaaccacctcaaactcacagctacggtgcagacacgttttctctcactccaggaattattttgacg 12196910  T
Q  369 atcagaccgttgaaatcgaagaaccgcatgttgggaacacgctgtccaaaaattagcttaatcggacggtgaacgaaggcgtagtcgcaattctacgatg 468  Q
    |||| ||    |||| |||| |||| |||| || ||||| | | |||||| |||||||  ||||||| ||||||||||||||||| ||||||||||||||    
T  12196911 atcaaac----gaaa-cgaaaaaccacatgctgagaacatgttttccaaatattagctccatcggaccgtgaacgaaggcgtagttgcaattctacgatg 12197005  T
Q  469 acatgtttgaggaaaacgaaattggcttcaatg 501  Q
    ||| |||| |||||||||||| |||||| ||||    
T  12197006 acaggttttaggaaaacgaaaatggctttaatg 12197038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 9 - 162
Target Start/End: Original strand, 12911664 - 12911815
Alignment:
Q  9 ttctttaattcatcaacaaaatgtaacatttcttttccaagatcacaaaaacatataaagcacattaatataaaatatatcaattcacaccacattatca 108  Q
    ||||||||||||||||  |||||||||||||||||||||| || | ||||| | |||||||| |||||||||||| || ||||||| || ||||||||||    
T  12911664 ttctttaattcatcaa--aaatgtaacatttcttttccaacataaaaaaaataaataaagcatattaatataaaaaatgtcaattcgcatcacattatca 12911761  T
Q  109 tacacaactttcatataaaacataattaagaataatcactcataattaataata 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12911762 tacacaactttcatataaaacataattaagaataatcactcataattaataata 12911815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 171 - 288
Target Start/End: Original strand, 12911849 - 12911966
Alignment:
Q  171 aatacgttttaattatttttctttttaaaagacaagaattgctacttctacttaataacacagcctagcacttagtatgtacatatgggaaaaagccttt 270  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||| | |||||||||||||| |||||||||||||||| || ||||||||||| || ||    
T  12911849 aatacattttaattatttttctttttaaaagacaaaaattgctacctttacttaataacacaacctagcacttagtatggacgtatgggaaaaaaccctt 12911948  T
Q  271 acctcgagagcttttctt 288  Q
    ||||| ||||||||||||    
T  12911949 acctcaagagcttttctt 12911966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 171 - 318
Target Start/End: Original strand, 10289325 - 10289474
Alignment:
Q  171 aatacgttttaattatttttctttttaaaagacaagaattgctacttctacttaataacacag-cctagcacttagtatgtacatatggg-aaaaagcct 268  Q
    ||||| |||||||| |||||||||||| |||||||| ||| ||||   |||||||| |||||| |||||||||||||||| || |||||| ||||||||     
T  10289325 aatacattttaattgtttttctttttagaagacaagcattactaccattacttaatgacacagtcctagcacttagtatggacgtatggggaaaaagccc 10289424  T
Q  269 ttacctcgagagcttttctttctagtcgaactctaaaccacctcaaactc 318  Q
    ||||||||  |||||| ||| |||| | ||||||||||||||||||||||    
T  10289425 ttacctcgtaagctttccttcctagccaaactctaaaccacctcaaactc 10289474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 177 - 318
Target Start/End: Original strand, 48654379 - 48654522
Alignment:
Q  177 ttttaattatttttctttttaaaagacaagaattgctacttctacttaataaca-cagcctagcacttagtatgtacatatggg-aaaaagcctttacct 274  Q
    ||||| || |||||||||  ||||||||||||||  |||||||| || | |||| || ||||| |||||||||| || |||||| ||||| || ||||||    
T  48654379 ttttagttgtttttctttccaaaagacaagaatttgtacttctaattcacaacatcatcctagtacttagtatggacgtatggggaaaaaacccttacct 48654478  T
Q  275 cgagagcttttctttctagtcgaactctaaaccacctcaaactc 318  Q
    ||| ||||||| || |||| ||||||||||||||||||||||||    
T  48654479 cgaaagcttttgttcctagccgaactctaaaccacctcaaactc 48654522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 27 - 144
Target Start/End: Original strand, 10289195 - 10289312
Alignment:
Q  27 aaatgtaacatttcttttccaagatcacaaaaacatataaagcacattaatataaaatatatcaattcacaccacattatcatacacaactttcatataa 126  Q
    |||| |||||| ||||| || | ||||||| ||||||| ||||| | |||||||||| | | || |||||| |||||   ||||||||||||||||||||    
T  10289195 aaatctaacatctctttccctacatcacaagaacatatcaagcataataatataaaacaaaccagttcacatcacatccacatacacaactttcatataa 10289294  T
Q  127 aacataattaagaataat 144  Q
    ||||||||||| ||||||    
T  10289295 aacataattaaaaataat 10289312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 264
Target Start/End: Complemental strand, 22077732 - 22077644
Alignment:
Q  177 ttttaattatttttctttttaaaagacaagaattgctacttctacttaataaca-cagcctagcacttagtatgtacatatgggaaaaa 264  Q
    ||||| || |||||||| |||| ||||||||||  |||| |||| || |||||| || ||||| |||||||||| ||||||||||||||    
T  22077732 ttttagttgtttttcttcttaacagacaagaatctctacctctaattcataacatcatcctagtacttagtatgaacatatgggaaaaa 22077644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 22077908 - 22077858
Alignment:
Q  9 ttctttaattcatcaacaaaatgtaacatttcttttccaagatcacaaaaa 59  Q
    ||||||||||||| || ||||||||||| ||||||||||| | ||||||||    
T  22077908 ttctttaattcataaaaaaaatgtaacacttcttttccaacaccacaaaaa 22077858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 145; Significance: 4e-76; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 55162436 - 55162272
Alignment:
Q  1 tctttctcttctttaattcatcaacaaaatgtaacatttcttttccaagatcacaaaaacatataaagcacattaatataaaatatatcaattcacacca 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||  |||||||||||    
T  55162436 tctttctcttctttaattcatcaaaaaaatgtaacatttcttttccaacatcacaaaaacatataaagcgcattaatataaaatatactaattcacacca 55162337  T
Q  101 cattatcatacacaactttcatataaaacataattaagaataatcactcataattaataatactc 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55162336 cattatcatacacaactttcatataaaacataattaagaataatcactcataattaataatactc 55162272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 40459205 - 40459044
Alignment:
Q  1 tctttctcttctttaattcatcaac-aaaatgtaacatttcttttccaagatcacaaaaacatataaagcacattaatataaaatatatcaattcacacc 99  Q
    |||||||||||||||||||| |||  ||||||||||||||||||||||| ||||||||| ||||||||||| | ||||||||||||||||||||||||||    
T  40459205 tctttctcttctttaattcaccaaagaaaatgtaacatttcttttccaacatcacaaaa-catataaagcataataatataaaatatatcaattcacacc 40459107  T
Q  100 acattatcatacacaactttcatataaaacataattaagaataatcactcataattaataata 162  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40459106 acattatcatacacaactttcatataaaacataattaagaataatcactcataattaataata 40459044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 171 - 295
Target Start/End: Complemental strand, 40459010 - 40458885
Alignment:
Q  171 aatacgttttaattatttttctttttaaaagacaagaattgctacttctacttaataacacagcctagcacttagtatgtacatat-gggaaaaagcctt 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| || ||| ||||||||||| |    
T  40459010 aatacgttttaattatttttctttttaaaagacaagaattgctacctctacttaataacacagtctagcacttagtatggacgtatggggaaaaagccct 40458911  T
Q  270 tacctcgagagcttttctttctagtc 295  Q
    ||||||||||||||||||| ||||||    
T  40458910 tacctcgagagcttttcttcctagtc 40458885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 171 - 281
Target Start/End: Complemental strand, 55162241 - 55162130
Alignment:
Q  171 aatacgttttaattatttttctttttaaaagacaagaattgctacttctacttaataacacagcctagcacttagtatgtacatatg-ggaaaaagcctt 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||| |||||||  | |    
T  55162241 aatacgttttaattatttttctttttaaaagacaagaattgctacttctacttaataacacagtctagcacttagtatggacgtatgaggaaaaaaacct 55162142  T
Q  270 tacctcgagagc 281  Q
    |||||| |||||    
T  55162141 tacctcaagagc 55162130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 177 - 276
Target Start/End: Complemental strand, 69349 - 69249
Alignment:
Q  177 ttttaattatttttctttttaaaagacaagaattgctacttctacttaataacacag-cctagcacttagtatgtacatatgggaaaaagcctttacctc 275  Q
    |||||||| |||||||||| || ||||||||||||||||  ||| |||||||||||| |||| ||||||||||| || ||||||||||| || |||||||    
T  69349 ttttaattgtttttcttttcaagagacaagaattgctaccactatttaataacacagtcctaacacttagtatggacgtatgggaaaaaacccttacctc 69250  T
Q  276 g 276  Q
    |    
T  69249 g 69249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 148
Target Start/End: Complemental strand, 41868898 - 41868770
Alignment:
Q  26 aaaatgtaacatttctttt-ccaagatcacaaaaacatataaagcacatt-----aatataaaatatatcaattcacaccacattatcatacacaacttt 119  Q
    ||||||||||||||||||| |||| | |||| ||||||||||| || | |     || ||||||||||||| | |||| |||||| ||||| |||||  |    
T  41868898 aaaatgtaacatttctttttccaacaacacataaacatataaatcagaatgaaataaaataaaatatatcattccacatcacattctcatatacaaccat 41868799  T
Q  120 catataaaacataattaagaataatcact 148  Q
    |||||||||||||| |||  |||||||||    
T  41868798 catataaaacataaataaagataatcact 41868770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 119; Significance: 1e-60; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 40691157 - 40691007
Alignment:
Q  1 tctttctcttctttaattcatcaacaaaa-tgtaacatttcttttccaagatcacaaaaacatataaagcacattaatataaaatatatcaattcacacc 99  Q
    ||||| |||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  40691157 tctttttcttctttaattcatcaaaaaaaatgtaacatttcttttccaacatcacaaaaacatataaagcgcattgatataaaatatatcaattcacacc 40691058  T
Q  100 acattatcatacacaactttcatataaaacataattaagaataatcactca 150  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  40691057 acattatcatacacaactttcatctaaaacataattaagaataatcactca 40691007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 9 - 159
Target Start/End: Complemental strand, 30910032 - 30909884
Alignment:
Q  9 ttctttaattcatcaacaaaatgtaacatttcttttccaagatcacaaaaacatataaagcacattaatataaaatatatcaattcacaccacattatca 108  Q
    ||||||||||| ||||  |||||||||||| ||||||||| || | |||||||||||||||| | |||||||||||||||||| || || |||||||||     
T  30910032 ttctttaattcgtcaa--aaatgtaacattacttttccaacataaaaaaaacatataaagcataataatataaaatatatcaactcgcatcacattatcg 30909935  T
Q  109 tacacaactttcatataaaacataattaagaataatcactcataattaata 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30909934 tacacaactttcatataaaacataattaagaataatcactcataattaata 30909884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 171 - 264
Target Start/End: Complemental strand, 40687649 - 40687556
Alignment:
Q  171 aatacgttttaattatttttctttttaaaagacaagaattgctacttctacttaataacacagcctagcacttagtatgtacatatgggaaaaa 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||| || |||||||||||    
T  40687649 aatacgttttaattatttttctttttaaaagacaagaattgctacttctacttactaacacaacctaacacttagtatggacgtatgggaaaaa 40687556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 173 - 249
Target Start/End: Complemental strand, 30909845 - 30909772
Alignment:
Q  173 tacgttttaattatttttctttttaaaagacaagaattgctacttctacttaataacacagcctagcacttagtatg 249  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||   ||||||| ||||||||||||||||    
T  30909845 tacgttttaattatttttctttttaaaagacaagaattgctacctctact---taacacaacctagcacttagtatg 30909772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 177 - 264
Target Start/End: Complemental strand, 38000944 - 38000856
Alignment:
Q  177 ttttaattatttttctttttaaaagacaagaattgctacttctacttaataacacagc-ctagcacttagtatgtacatatgggaaaaa 264  Q
    |||||||||| | ||||||||||||||||||||||||||   || ||||||||||||| ||||||||||||||| || |||||| ||||    
T  38000944 ttttaattatctgtctttttaaaagacaagaattgctaccattatttaataacacagctctagcacttagtatggacgtatggggaaaa 38000856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 38001115 - 38001023
Alignment:
Q  9 ttctttaattcatcaacaaaatgtaacatttcttttccaagatcacaaaaacatataaagcacattaatataaaatatatcaattcacaccaca 102  Q
    |||| ||||| ||||| ||||| |||||| |||||||||| ||||||||||||||||||||| | ||  ||||||||||||| |||||| ||||    
T  38001115 ttctctaatttatcaa-aaaatctaacatctcttttccaacatcacaaaaacatataaagcataatagcataaaatatatcatttcacatcaca 38001023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 233
Target Start/End: Complemental strand, 6308722 - 6308666
Alignment:
Q  177 ttttaattatttttctttttaaaagacaagaattgctacttctacttaataacacag 233  Q
    ||||||||||||||||||| || ||||||||||||||||  ||| ||||||||||||    
T  6308722 ttttaattatttttcttttcaagagacaagaattgctaccactatttaataacacag 6308666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 179 - 247
Target Start/End: Complemental strand, 27026718 - 27026649
Alignment:
Q  179 ttaattatttttctttttaaaagacaagaattgctacttctacttaataacac-agcctagcacttagta 247  Q
    |||||| |||||||||| ||||||||||||||| |||  ||| |||||||||| | ||||||||||||||    
T  27026718 ttaattgtttttcttttcaaaagacaagaattgttaccactatttaataacacaatcctagcacttagta 27026649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 2e-59; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 40729350 - 40729628
Alignment:
Q  1 tctttctcttctttaattcatcaacaaaatgtaacatttcttttccaagatcacaaaaacatataaagcacattaatataaaatatatcaattcacacca 100  Q
    ||||||| || |||||||||| || ||||| || |||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  40729350 tctttctattatttaattcataaaaaaaatatagcatttcttttccaacatcacaaaaacatataaagcataataatataaaatatatcaattcacacca 40729449  T
Q  101 cattatcatacacaactttcatataaaacataattaagaataatcactcata------attaataatactctacttaatacgttttaattatttttcttt 194  Q
    ||||||||||||||| || |||||||||||||||||||||||| ||||  ||      ||||||  ||| |     ||||||||||||| ||||||||||    
T  40729450 cattatcatacacaatttccatataaaacataattaagaataaacacttttagaaaggattaattttac-catgaaaatacgttttaatcatttttcttt 40729548  T
Q  195 ttaaaagacaagaattgctacttctacttaataacacagcctagcacttagtatgtacatatgggaaaaagcctttacct 274  Q
    ||||||||||||||||||||| |||||||||||| ||| || ||||| ||||||| || ||| | |||||| | ||||||    
T  40729549 ttaaaagacaagaattgctacctctacttaataatacaacccagcacctagtatggacgtatagaaaaaagtccttacct 40729628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 36732116 - 36732280
Alignment:
Q  1 tctttctcttctttaattcatcaacaaa---atgtaacatttcttttccaagatcacaaaaacatataaagcacattaatataaaatatatcaattcaca 97  Q
    ||||||||||| |||||||||||| |||   |||| ||||||||||||||  ||||||||||||||||||||| | ||||||||||||||||||||||||    
T  36732116 tctttctcttccttaattcatcaaaaaacaaatgtgacatttcttttccagcatcacaaaaacatataaagcataataatataaaatatatcaattcaca 36732215  T
Q  98 ccacattatcatacacaactttcatataaaacataattaagaataatcactcataattaataata 162  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  36732216 ccacattatcatacacaacttttatatcaaacataattaagaataatcactcataattaataata 36732280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 26 - 162
Target Start/End: Original strand, 18292694 - 18292830
Alignment:
Q  26 aaaatgtaacatttcttttccaagatcacaaaaacatataaagcacattaatataaaatatatcaattcacaccacattatcatacacaactttcatata 125  Q
    ||||||||||||||||||||||| |||||||||| |||||||||| | ||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  18292694 aaaatgtaacatttcttttccaacatcacaaaaatatataaagcataataatataaaatatatcaattcacactacattatcacacacaactttcatata 18292793  T
Q  126 aaacataattaagaataatcactcataattaataata 162  Q
    |||||||||||||||||||||||||||||||||||||    
T  18292794 aaacataattaagaataatcactcataattaataata 18292830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 40447731 - 40447571
Alignment:
Q  1 tctttctcttctttaattcatcaacaaaatgtaacatttcttttccaagatcacaaaaacatataaagcacattaatataaaatatatcaattcacacca 100  Q
    ||||| |||||||||| ||||||| ||||||||||||| |||||||||   ||||||| ||||||||||| | ||||||||||||||||||| |||||||    
T  40447731 tctttttcttctttaaatcatcaagaaaatgtaacattacttttccaacgccacaaaa-catataaagcataataatataaaatatatcaatccacacca 40447633  T
Q  101 cattatcatacacaactttcatataaaacataattaagaataatcactcataattaataata 162  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40447632 cattatcatacactactttcatataaaacataattaagaataatcactcataattaataata 40447571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 264 - 462
Target Start/End: Complemental strand, 22403757 - 22403559
Alignment:
Q  264 agcctttacctcgagagcttttctttctagtcgaactctaaaccacctcaaactcacagctacggtgaagacacggtttctctcactccaagagttagtt 363  Q
    |||| ||||||||||| |||||||| |||| ||||||||||||||||| |||||||||||||||||| ||||||| |||||||| |||||    ||| ||    
T  22403757 agcccttacctcgagatcttttcttcctagccgaactctaaaccaccttaaactcacagctacggtgcagacacgatttctctcgctccagtcattaatt 22403658  T
Q  364 tgacgatcagaccgttgaaatcgaagaaccgcatgttgggaacacgctgtccaaaaattagcttaatcggacggtgaacgaaggcgtagtcgcaattct 462  Q
    |||||||||| |||||||||  ||||||| ||||||||  |||| |||| ||||||||||||| ||| | ||||||||||||||||||| | |||||||    
T  22403657 tgacgatcaggccgttgaaaatgaagaactgcatgttgcaaacatgctgcccaaaaattagctcaattgaacggtgaacgaaggcgtagacacaattct 22403559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 239 - 356
Target Start/End: Original strand, 41340857 - 41340974
Alignment:
Q  239 cacttagtatgtacatatgggaaaaagcctttacctcgagagcttttctttctagtcgaactctaaaccacctcaaactcacagctacggtgaagacacg 338  Q
    ||||||||||| || |||||||||||||| |||||| ||||||||||||| |||| |||||||||||| |||||||||||||| ||||||| ||||||||    
T  41340857 cacttagtatggacgtatgggaaaaagcccttacctagagagcttttcttcctaggcgaactctaaacaacctcaaactcacaactacggttaagacacg 41340956  T
Q  339 gtttctctcactccaaga 356  Q
     |||||||||||||||||    
T  41340957 ttttctctcactccaaga 41340974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 171 - 264
Target Start/End: Original strand, 18292864 - 18292957
Alignment:
Q  171 aatacgttttaattatttttctttttaaaagacaagaattgctacttctacttaataacacagcctagcacttagtatgtacatatgggaaaaa 264  Q
    ||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||    
T  18292864 aatacattttaactatttttctttttaaaagacaagaattgctacctctacttaataacacagcctagcacttagtatggacgtatgggaaaaa 18292957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 171 - 276
Target Start/End: Complemental strand, 40447537 - 40447431
Alignment:
Q  171 aatacgttttaattatttttctttttaaaagacaagaattgctacttctacttaataacacagcctagcacttagtatgtacatat-gggaaaaagcctt 269  Q
    |||||||||||| |||||||||||||| |||||||||||| |||| |||||||||||||| || ||||||||||||||| || ||| ||||||||||| |    
T  40447537 aatacgttttaactatttttctttttagaagacaagaattactacctctacttaataacatagtctagcacttagtatggacgtatggggaaaaagccct 40447438  T
Q  270 tacctcg 276  Q
    |||||||    
T  40447437 tacctcg 40447431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 189 - 318
Target Start/End: Original strand, 32735455 - 32735586
Alignment:
Q  189 ttctttttaaaagacaagaattgctacttctacttaataacacag-cctagcacttagtatgtacatatggg-aaaaagcctttacctcgagagcttttc 286  Q
    ||||||| || ||||||||||  |||| |||| || |||||| |  |||||||||||||| | || |||||| |||||||| ||||||||||||||||||    
T  32735455 ttcttttcaacagacaagaatctctacctctaattcataacataatcctagcacttagtaagaacgtatggggaaaaagcccttacctcgagagcttttc 32735554  T
Q  287 tttctagtcgaactctaaaccacctcaaactc 318  Q
    || |||| ||||||||||||||||||||||||    
T  32735555 ttcctagccgaactctaaaccacctcaaactc 32735586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 26 - 144
Target Start/End: Original strand, 41340674 - 41340792
Alignment:
Q  26 aaaatgtaacatttcttttccaagatcacaaaaacatataaagcacattaatataaaatatatcaattcacaccacattatcatacacaactttcatata 125  Q
    ||||| |||||| ||||| || | ||||||| ||||||| ||||| | |||||||||| ||| || |||||| |||||   |||||||||||||||||||    
T  41340674 aaaatctaacatctctttccctacatcacaagaacatatcaagcataataatataaaacataccagttcacatcacatccacatacacaactttcatata 41340773  T
Q  126 aaacataattaagaataat 144  Q
    |||||||| ||||||||||    
T  41340774 aaacataagtaagaataat 41340792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 171 - 264
Target Start/End: Original strand, 36732462 - 36732552
Alignment:
Q  171 aatacgttttaattatttttctttttaaaagacaagaattgctacttctacttaataacacagcctagcacttagtatgtacatatgggaaaaa 264  Q
    |||| |||||||||||||||||||||||||||||||||||| ||| || |||||||||    ||||||||||||||||| || | |||||||||    
T  36732462 aatatgttttaattatttttctttttaaaagacaagaattgttacctcaacttaataa---tgcctagcacttagtatgaacgtgtgggaaaaa 36732552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 306 - 425
Target Start/End: Original strand, 36732564 - 36732683
Alignment:
Q  306 ccacctcaaactcacagctacggtgaagacacggtttctctcactccaagagttagtttgacgatcagaccgttgaaatcgaagaaccgcatgttgggaa 405  Q
    |||||||||||||| | |||| ||| ||||||  |||||||||||||| || ||| |||||||||| ||||||||||| ||||||||| ||||    |||    
T  36732564 ccacctcaaactcataactactgtgcagacacattttctctcactccaggaattattttgacgatcggaccgttgaaaacgaagaaccacatgcgaagaa 36732663  T
Q  406 cacgctgtccaaaaattagc 425  Q
    || |||| ||||||||||||    
T  36732664 catgctgcccaaaaattagc 36732683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 117 - 162
Target Start/End: Original strand, 36732321 - 36732366
Alignment:
Q  117 tttcatataaaacataattaagaataatcactcataattaataata 162  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  36732321 tttcatatcaaacataattaagaataatcactcataattaataata 36732366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 189 - 277
Target Start/End: Complemental strand, 1193685 - 1193596
Alignment:
Q  189 ttctttttaaaagacaagaattgctacttctacttaataacacagc-ctagcacttagtatgtacatatgggaaaaagcctttacctcga 277  Q
    ||||||| |||||||||||||||||||  ||  ||||||||| ||  ||||||||||||| | || |||||||||||||| |||||||||    
T  1193685 ttcttttcaaaagacaagaattgctacccctgtttaataacaaagtactagcacttagtaagaacttatgggaaaaagcccttacctcga 1193596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 177 - 263
Target Start/End: Complemental strand, 44788614 - 44788527
Alignment:
Q  177 ttttaattatttttctttttaaaagacaagaattgctacttctacttaataacacag-cctagcacttagtatgtacatatgggaaaa 263  Q
    |||||||| |||||||||| ||||||||| |||| ||||  ||| |||||||||||| |||| ||||||||| | || ||||||||||    
T  44788614 ttttaattgtttttcttttcaaaagacaataattactaccactatttaataacacagtcctaacacttagtaagaacgtatgggaaaa 44788527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 177 - 249
Target Start/End: Complemental strand, 29270734 - 29270661
Alignment:
Q  177 ttttaattatttttctttttaaaagacaagaattgctacttctacttaataacac-agcctagcacttagtatg 249  Q
    |||||||| |||||||||| |||||||||||||||||||  ||| |||||| ||| | |||| |||||||||||    
T  29270734 ttttaattgtttttcttttcaaaagacaagaattgctaccactatttaatagcacaaccctaacacttagtatg 29270661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 440 - 489
Target Start/End: Original strand, 41341000 - 41341049
Alignment:
Q  440 aacgaaggcgtagtcgcaattctacgatgacatgtttgaggaaaacgaaa 489  Q
    |||||||||||||||||| ||||||| ||||  |||||||||||||||||    
T  41341000 aacgaaggcgtagtcgcagttctacgctgactggtttgaggaaaacgaaa 41341049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 177 - 274
Target Start/End: Original strand, 28267695 - 28267793
Alignment:
Q  177 ttttaattatttttctttttaaaagacaagaattgctacttctacttaataaca-cagcctagcacttagtatgtacatatgggaaaaagcctttacct 274  Q
    ||||| || |||||||||| |||||| |||||||  |||||||| || | |||| || ||||| |||||||||| || ||||||||||| || ||||||    
T  28267695 ttttagttgtttttcttttcaaaagataagaatttgtacttctaattcacaacatcatcctagtacttagtatggacgtatgggaaaaaacccttacct 28267793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 171 - 209
Target Start/End: Original strand, 36732400 - 36732437
Alignment:
Q  171 aatacgttttaattatttttctttttaaaagacaagaat 209  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  36732400 aatacgttttaattatttt-ctttttaaaagacaagaat 36732437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 12774861 - 12774910
Alignment:
Q  21 tcaacaaaatgtaacatttcttttccaagatcacaaaaacatataaagca 70  Q
    |||| ||||| |||||||||||||| || |||||||||||| ||||||||    
T  12774861 tcaaaaaaatctaacatttcttttctaacatcacaaaaacaaataaagca 12774910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 395 - 485
Target Start/End: Original strand, 11968236 - 11968326
Alignment:
Q  395 catgttgggaacacgctgtccaaaaattagcttaatcggacggtgaacgaaggcgtagtcgcaattctacgatgacatgtttgaggaaaac 485  Q
    ||||||||||||||||||||||| |||||||| |||| ||| |||||||||| |||||||||||||||||||||||| |||||| ||||||    
T  11968236 catgttgggaacacgctgtccaataattagctcaatcagacagtgaacgaagccgtagtcgcaattctacgatgacaggtttgaagaaaac 11968326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 171 - 318
Target Start/End: Original strand, 7337228 - 7337377
Alignment:
Q  171 aatacgttttaattatttttctttttaaaagacaagaattgctacttctacttaataacacag-cctagcacttagtatgtacatatggg-aaaaagcct 268  Q
    ||||| |||||||| |||||||||||| |||||||| ||| ||||   |||||||| |||||| |||||||||||||||| || |||||| ||||||||     
T  7337228 aatacattttaattgtttttctttttagaagacaagcatttctaccattacttaatgacacagtcctagcacttagtatggacgtatggggaaaaagccc 7337327  T
Q  269 ttacctcgagagcttttctttctagtcgaactctaaaccacctcaaactc 318  Q
    ||||||||  |||||| ||| |||| | ||||||||||||||||||||||    
T  7337328 ttacctcgtaagctttccttcctagccaaactctaaaccacctcaaactc 7337377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 234 - 325
Target Start/End: Original strand, 11968089 - 11968180
Alignment:
Q  234 cctagcacttagtatgtacatatgggaaaaagcctttacctcgagagcttttctttctagtcgaactctaaaccacctcaaactcacagcta 325  Q
    ||||| |||||||||| || ||||||||||| || ||||||||||| |||||||| |||| | |||||||||||||||||||||||||||||    
T  11968089 cctagtacttagtatggacgtatgggaaaaaacccttacctcgagaacttttcttcctagccaaactctaaaccacctcaaactcacagcta 11968180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 171 - 277
Target Start/End: Original strand, 43278381 - 43278488
Alignment:
Q  171 aatacgttttaattatttttctttttaaaagacaagaattgctacttctacttaataacacag-cctagcacttagtatgtacatatgggaaaaagcctt 269  Q
    ||||| ||||||||||||||||||||| |||||||| ||||||||  ||| ||||| |||||| |||| |||||| |||| || |||| ||||||||| |    
T  43278381 aatacattttaattatttttctttttataagacaagcattgctaccactatttaatgacacagccctaacacttaatatggacgtatgagaaaaagccct 43278480  T
Q  270 tacctcga 277  Q
    ||||||||    
T  43278481 tacctcga 43278488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 144
Target Start/End: Original strand, 43278250 - 43278368
Alignment:
Q  26 aaaatgtaacatttcttttccaagatcacaaaaacatataaagcacattaatataaaatatatcaattcacaccacattatcatacacaactttcatata 125  Q
    ||||| |||||| ||||| || | ||||||| ||||||| ||||| | |||||||||| | | || |||||| |||||   ||||||||||||||| |||    
T  43278250 aaaatctaacatctctttccctacatcacaagaacatatcaagcataataatataaaacaaaccagttcacatcacatccacatacacaactttcacata 43278349  T
Q  126 aaacataattaagaataat 144  Q
    |||||||||||||||||||    
T  43278350 aaacataattaagaataat 43278368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 27 - 144
Target Start/End: Original strand, 7337098 - 7337215
Alignment:
Q  27 aaatgtaacatttcttttccaagatcacaaaaacatataaagcacattaatataaaatatatcaattcacaccacattatcatacacaactttcatataa 126  Q
    |||| |||||| ||||| || | ||||||| ||||||| ||||| | |||||||||| | | || |||||| |||||   ||||||||||||||||||||    
T  7337098 aaatctaacatctctttccctacatcacaagaacatatcaagcataataatataaaacaaaccagttcacatcacatccacatacacaactttcatataa 7337197  T
Q  127 aacataattaagaataat 144  Q
    ||||||||||| ||||||    
T  7337198 aacataattaaaaataat 7337215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 308 - 391
Target Start/End: Complemental strand, 16975212 - 16975129
Alignment:
Q  308 acctcaaactcacagctacggtgaagacacggtttctctcactccaagagttagtttgacgatcagaccgttgaaatcgaagaa 391  Q
    ||||||||||||||||||||||  ||||||  ||||| |||||||| || ||| |||||||||  ||||||||||| |||||||    
T  16975212 acctcaaactcacagctacggtacagacacattttctgtcactccaggaattattttgacgattggaccgttgaaaacgaagaa 16975129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 8730895 - 8730831
Alignment:
Q  182 attatttttctttttaaaagacaagaattgctacttctacttaataacacag-cctagcacttag 245  Q
    ||||||||||||||||||||||||||||| | ||| ||| ||||||||| || ||||||||||||    
T  8730895 attatttttctttttaaaagacaagaattaccactactatttaataacatagccctagcacttag 8730831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 9082782 - 9082718
Alignment:
Q  182 attatttttctttttaaaagacaagaattgctacttctacttaataacacag-cctagcacttag 245  Q
    ||||||||||||||||||||||||||||| | ||| ||| ||||||||| || ||||||||||||    
T  9082782 attatttttctttttaaaagacaagaattaccactactatttaataacatagccctagcacttag 9082718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 177 - 247
Target Start/End: Complemental strand, 9104273 - 9104202
Alignment:
Q  177 ttttaattatttttctttttaaaagacaagaattgctacttctacttaataacacag-cctagcacttagta 247  Q
    |||| ||| |||||||||| |||||||||||||||||||  ||| |||||||||||| |||| |||||||||    
T  9104273 tttttattgtttttcttttcaaaagacaagaattgctaccactatttaataacacagtcctaacacttagta 9104202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 177 - 274
Target Start/End: Original strand, 17542816 - 17542914
Alignment:
Q  177 ttttaattatttttctttttaaaagacaagaattgctacttctacttaataacacag-cctagcacttagtatgtacatatgggaaaaagcctttacct 274  Q
    |||||||| |||||||||| || ||||||||||||||||  ||| |||||||||||| ||||  |||||||| | || |||||| ||||| | ||||||    
T  17542816 ttttaattgtttttcttttcaagagacaagaattgctaccactatttaataacacagtcctaaaacttagtaagaacgtatggggaaaaggccttacct 17542914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 257 - 351
Target Start/End: Complemental strand, 35839118 - 35839024
Alignment:
Q  257 gggaaaaagcctttacctcgagagcttttctttctagtcgaactctaaaccacctcaaactcacagctacggtgaagacacggtttctctcactc 351  Q
    ||||||||||  ||| |||||||||||||||| |||||| ||||||||||||||||||| ||||| ||| |||| ||||||| ||||||||||||    
T  35839118 gggaaaaagctcttagctcgagagcttttcttcctagtcaaactctaaaccacctcaaagtcacaactatggtgcagacacgttttctctcactc 35839024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 171 - 284
Target Start/End: Complemental strand, 44436168 - 44436055
Alignment:
Q  171 aatacgttttaattatttttctttttaaaagacaagaattgctacttctacttaataacacagcc-tagcacttagtatgtacatatgggaaaaagcctt 269  Q
    ||||| |||||||||||||||||||||||||||||||||||||||  ||| ||||||||||| || |||||||||||||  || ||| |||||||||| |    
T  44436168 aatacattttaattatttttctttttaaaagacaagaattgctaccactatttaataacacatccttagcacttagtattgacgtat-ggaaaaagccct 44436070  T
Q  270 tacctcgagagcttt 284  Q
    |||||| | ||||||    
T  44436069 tacctcaaaagcttt 44436055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 362 - 502
Target Start/End: Complemental strand, 24423140 - 24423000
Alignment:
Q  362 tttgacgatcagaccgttgaaatcgaagaaccgcatgttgggaacacgctgtccaaaaattagcttaatcggacggtgaacgaaggcgtagtcgcaattc 461  Q
    |||||||||| |||| |||||| |||||||||  ||| ||| |||| ||||| |||||||||||  ||||| | ||||||| |||| |||||| ||||||    
T  24423140 tttgacgatcggacctttgaaaacgaagaaccaaatggtggaaacatgctgttcaaaaattagcgcaatcgaatggtgaacaaaggtgtagtcccaattc 24423041  T
Q  462 tacgatgacatgtttgaggaaaacgaaattggcttcaatga 502  Q
    |||| ||||||| ||   |||||||||| | ||| ||||||    
T  24423040 tacggtgacatggttagagaaaacgaaaatagctccaatga 24423000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 177 - 272
Target Start/End: Original strand, 40841556 - 40841652
Alignment:
Q  177 ttttaattatttttctttttaaaagacaagaattgctacttctacttaataacacag-cctagcacttagtatgtacatatgggaaaaagcctttac 272  Q
    |||| ||| |||||||||| |||||||||||||||||||  ||| |||||||||||| |||| ||||||||| | || |||||||||||||| ||||    
T  40841556 tttttattgtttttcttttcaaaagacaagaattgctaccactatttaataacacagtcctaacacttagtaagaacgtatgggaaaaagcccttac 40841652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 177 - 293
Target Start/End: Original strand, 22816490 - 22816608
Alignment:
Q  177 ttttaattatttttctttttaaaagacaagaattgctacttctacttaataacacag-cctagcacttagtatgtacatat-gggaaaaagcctttacct 274  Q
    |||||||| |||||||||| || ||||||||||||| ||  ||| |||||||||||| |||| ||||||| | | || ||| ||||||||||| ||||||    
T  22816490 ttttaattgtttttcttttcaagagacaagaattgcaaccactatttaataacacagtcctaacacttagcaagaacgtatggggaaaaagcccttacct 22816589  T
Q  275 cgagagcttttctttctag 293  Q
    |||||||||| ||| ||||    
T  22816590 cgagagctttccttcctag 22816608  T

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Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 177 - 274
Target Start/End: Original strand, 41958486 - 41958584
Alignment:
Q  177 ttttaattatttttctttttaaaagacaagaattgctacttctacttaataacacagc-ctagcacttagtatgtacatatgggaaaaagcctttacct 274  Q
    |||||||||| |  |||||||||||||||||||||| ||  ||| ||||||||||||| |||||||||| |||| |  |||||||||||||| ||||||    
T  41958486 ttttaattatctgcctttttaaaagacaagaattgccaccactatttaataacacagctctagcacttaatatggatgtatgggaaaaagcccttacct 41958584  T

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Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 13 - 137
Target Start/End: Original strand, 41958319 - 41958442
Alignment:
Q  13 ttaattcatcaacaaaatgtaacatttcttttccaagatcacaaaaacatataaagcacattaatataaaatatatcaattcacaccacattatcataca 112  Q
    |||||| ||||| ||||| |||||| |||||||||| ||||||||||||||||||||| | ||  ||||||||||| | |||||| |||| | |||| ||    
T  41958319 ttaatttatcaa-aaaatctaacatctcttttccaacatcacaaaaacatataaagcataatagcataaaatatattatttcacatcacactctcattca 41958417  T
Q  113 caactttcatataaaacataattaa 137  Q
     || | |||| || |||||||||||    
T  41958418 taaatatcatctagaacataattaa 41958442  T

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Target: scaffold0413 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 189 - 353
Target Start/End: Complemental strand, 8927 - 8759
Alignment:
Q  189 ttctttttaaaagacaagaattgctacttctacttaataacacag-cctagcacttagtatgtacatatggg-aaaaagcctttacctcgagagcttttc 286  Q
    ||||||| || |||||||||||  ||| |||| || |||||| |  ||||| |||||||| | || |||||| |||||||| ||||||||||||||||||    
T  8927 ttcttttcaacagacaagaatttatacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacctcgagagcttttc 8828  T
Q  287 tttctagtcgaactctaaaccacctcaaactcaca--gctacggtgaagacacggtttctctcactcca 353  Q
    || |||| | |||||||||||| |||||| |||||  ||||| ||| ||||||| |||| || ||||||    
T  8827 ttcctagccaaactctaaaccaactcaaagtcacagcgctactgtgcagacacgttttcactaactcca 8759  T

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Target: scaffold0413; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 457
Target Start/End: Complemental strand, 8745 - 8716
Alignment:
Q  428 aatcggacggtgaacgaaggcgtagtcgca 457  Q
    ||||||||||||||||||||||||||||||    
T  8745 aatcggacggtgaacgaaggcgtagtcgca 8716  T

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Target: scaffold0041 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 33280 - 33349
Alignment:
Q  26 aaaatgtaacatttcttttccaagatcacaaaaacatataaagcacattaatataaaatatatcaattca 95  Q
    ||||||||||||||||||||| | |||||||||||||||||| || | ||| ||||||||||||||||||    
T  33280 aaaatgtaacatttcttttcctacatcacaaaaacatataaaacataataagataaaatatatcaattca 33349  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 371
Target Start/End: Original strand, 10751658 - 10751772
Alignment:
Q  257 gggaaaaagcctttacctcgagagcttttctttctagtcgaactctaaaccacctcaaactcacagctacggtgaagacacggtttctctcactccaaga 356  Q
    ||||||| ||| ||||||||  ||||||  || |||| | ||| |||||| ||||||||||||||||||| ||  | ||||| ||||| |||||||| ||    
T  10751658 gggaaaaggcccttacctcgtaagctttcattcctagccaaacactaaactacctcaaactcacagctactgttcaaacacgttttctgtcactccagga 10751757  T
Q  357 gttagtttgacgatc 371  Q
     ||| ||||||||||    
T  10751758 attattttgacgatc 10751772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 318
Target Start/End: Original strand, 13777332 - 13777393
Alignment:
Q  257 gggaaaaagcctttacctcgagagcttttctttctagtcgaactctaaaccacctcaaactc 318  Q
    ||||||||| | ||||||||  |||||| ||| |||| | ||||||||||||||||||||||    
T  13777332 gggaaaaagtccttacctcgtaagctttccttcctagccaaactctaaaccacctcaaactc 13777393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 273
Target Start/End: Complemental strand, 24992514 - 24992418
Alignment:
Q  177 ttttaattatttttctttttaaaagacaagaattgctacttctacttaataacacagcc-tagcacttagtatgtacatatgggaaaaagcctttacc 273  Q
    |||||||| |||||||||| |||| ||||||||| |||||| || || |||||| | || ||| ||||| |||  ||||||||||||||||| |||||    
T  24992514 ttttaattgtttttcttttcaaaa-acaagaatttctacttataattcataacatatccctagtacttaatatagacatatgggaaaaagcccttacc 24992418  T

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Target: scaffold0013 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 189 - 299
Target Start/End: Original strand, 243187 - 243299
Alignment:
Q  189 ttctttttaaaagacaagaattgctacttctacttaataacacag-cctagcacttagtatgtacatat-gggaaaaagcctttacctcgagagcttttc 286  Q
    ||||||| ||||||||||||||| |||  ||| ||||||||| || |||| ||||||||| | |  ||| ||||||| ||| ||||||||| |||||| |    
T  243187 ttcttttcaaaagacaagaattgatacccctatttaataacaaagccctaacacttagtaagaatgtatggggaaaacgccattacctcgaaagctttcc 243286  T
Q  287 tttctagtcgaac 299  Q
    || ||| ||||||    
T  243287 ttcctaatcgaac 243299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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