View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6522_low_12 (Length: 245)
Name: NF6522_low_12
Description: NF6522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6522_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 50108905 - 50108674
Alignment:
| Q |
1 |
agttttgtgaggaactaaatatatagataaaataaaatatttttacgaatattatcttgaaatttttgttgttgataaagtagagactgaaatttttggg |
100 |
Q |
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| T |
50108905 |
agttttgtgaggaactaaatatatagataaaataaaatatttttacgaatattatcttgaaatttttgttgttgataaagtagagactgaaatttttggg |
50108806 |
T |
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| Q |
101 |
atagctaattatatatattatgagagtggctaaacacaataatacactaacttatnnnnnnnnnnctaaataaattaagataaaatagaatcgccaaggc |
200 |
Q |
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| T |
50108805 |
atagctaattatatatattatgagagtggctaaacacaataatacactaacttat-caaaaaaaactaaataaattaagataaaatagaatcgccaaggc |
50108707 |
T |
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| Q |
201 |
caccctaagttaacattaccctccacccctgat |
233 |
Q |
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| T |
50108706 |
caccctaagttaacattaccctccacccctgat |
50108674 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 155
Target Start/End: Original strand, 4430064 - 4430105
Alignment:
| Q |
114 |
tatattatgagagtggctaaacacaataatacactaacttat |
155 |
Q |
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| T |
4430064 |
tatattattagagtggctaaacacaaaaatacactaacttat |
4430105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 42172134 - 42172197
Alignment:
| Q |
17 |
aaatatatagataaaataaaatatttttacgaatattatcttga-aatttttgttgttgataaagt |
81 |
Q |
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| T |
42172134 |
aaatatatagaaaaaataaaatacttttacga--attatcttgacaattttcgttgttgacaaagt |
42172197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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