View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6522_low_13 (Length: 238)
Name: NF6522_low_13
Description: NF6522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6522_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 50108920 - 50109148
Alignment:
| Q |
1 |
tactgtcaacaatgatttggttagataagaaagtttcttatgatcacttacatgtttttggatgtaaagcatcctgtaaagagtcaaaattgtgtgttta |
100 |
Q |
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| T |
50108920 |
tactgccaacgatgatttggttatataagaaagtttcttatgatcccttacatgtttttggatgtaaagcatcctgtaaagagtcaaaattgtgtgttta |
50109019 |
T |
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| Q |
101 |
gtggctactacctagatggggctcgttacaagttttattatgttgttatgaagaaacttatcggatgttgtgatgttgatttcatagaagacaagtagtt |
200 |
Q |
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| T |
50109020 |
gtggctactacctagatggagctcgttacaagttttattatgttgttatgaagaaacttatcagatgttgtgatgttgatttcatagaagacaagtagtt |
50109119 |
T |
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| Q |
201 |
gacagacattgatagaattagtgatgatg |
229 |
Q |
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| T |
50109120 |
gacagacattgatagaattagtgatgatg |
50109148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 170
Target Start/End: Complemental strand, 28228738 - 28228603
Alignment:
| Q |
34 |
tttcttatgatcacttacatgtttttggatgtaaagcatcctgtaaagagtcaaaattgtgtgtttagtggctactacctagatggggctcgttacaagt |
133 |
Q |
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| T |
28228738 |
tttcttatgaccacttatgtgttttcggatgcaaaacata-tgtgaagagtcaacattgtatgtttctttgctatgacttagatggagctgattacaggt |
28228640 |
T |
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| Q |
134 |
tttattatgttgttatgaagaaacttatcggatgttg |
170 |
Q |
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| T |
28228639 |
tttatgattgtgatatgaagaaacttatcggatgttg |
28228603 |
T |
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