View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6522_low_2 (Length: 476)
Name: NF6522_low_2
Description: NF6522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6522_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 83 - 460
Target Start/End: Complemental strand, 1160712 - 1160339
Alignment:
| Q |
83 |
ccttcaattaaagtctttatataacccctttaccctaccaaccaatgactacagttcaaatgaagccatatcaaatgaatatgaagatttcaatgtttct |
182 |
Q |
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| T |
1160712 |
ccttcaattaaagtctttatataacccctttaccctaccaa----tgactacagttcaaatgaagccatatcaaatgaatatgaagatttcaatgtttct |
1160617 |
T |
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| Q |
183 |
agtcttgttcctacttatcaattcatttgctcaagccatatcaaacaaagatgaagctagaagcatgcaaagcaatgaacaagctcaaggctttaatggt |
282 |
Q |
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| T |
1160616 |
agtcttgttcctacttatcaattcatgtgctcaagccatatcaaacaaagatgaagctagaagcattcaaagcaatgaacaagctcaaggctttaatggt |
1160517 |
T |
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| Q |
283 |
acaatttatttaccttttcaaacaagcacaaatttcaatattgtttcacacacttttggtttgataacttgttttattcaaattatagggaacttagatg |
382 |
Q |
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| T |
1160516 |
acaatttatttaccttttcaaacaagcacaaatttcaatattgtttcacacacttttggtttgataacttgttttattcaaattatagggaacttagatg |
1160417 |
T |
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| Q |
383 |
gaaatggaaatattgaggcatctacaaggttgaaccacagagatgggtttgaggaaagtcaaaatgcacacaaacatg |
460 |
Q |
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| T |
1160416 |
gaaatggaaatattgaggcatctacaaggttgaaccacaaagatgggtttgtggaaagtcaaaatgcacacaaacatg |
1160339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 1160752 - 1160714
Alignment:
| Q |
19 |
tctattaccattttttgggaccacattaaattactttca |
57 |
Q |
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| T |
1160752 |
tctattaccattttttgggaccacattgaattactttca |
1160714 |
T |
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