View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6522_low_3 (Length: 444)
Name: NF6522_low_3
Description: NF6522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6522_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 2344607 - 2344209
Alignment:
| Q |
1 |
taacttggaaaataaggaaccacttacgtgcgacaaactgaaatggaccagaaattaaaagaaaaaccacagaagaaggttgctagtgtccaaattgaca |
100 |
Q |
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| T |
2344607 |
taacttggaaaataaggaaccacttacatgcgacaaactgaaatagaccagaaattaaaagaaaaaccacagaagaaggttgctagtgtccaaattgaca |
2344508 |
T |
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| Q |
101 |
atccagatcctataagtctaaatggattgacactgcaaaatacatgaattgtgagaaaggattcttatgacatttaatgtttaaagtaacaaaagtatct |
200 |
Q |
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| T |
2344507 |
atccggatcctataagtttaaatggattgacactgcgaaatacatgaattgtgagaaaggattcttatgacatttaatgtttaagctaacaaaagtatct |
2344408 |
T |
|
| Q |
201 |
aataatatgaataggtttcaaactgattgcaacacgaatggctatcctaattacctcttagctagagacacaaatattggagaagccatgagaagtccaa |
300 |
Q |
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| T |
2344407 |
aatagtatgaataggtttcaaactgattgcaacacgaatggctatcctaattacctcttagctagagacgcaaatattggagaagccatgagaagtccaa |
2344308 |
T |
|
| Q |
301 |
ccataaaatcagatgataaaacaccatcttcaaaattgttcaacttaaaatcccacctgcagacaacgagacaaatagttaaaaactattaaattgcat |
399 |
Q |
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| T |
2344307 |
ccataaaatcagatgataaaacaccatcttcaaaattgttcaacttaaaatcccccctgcagacaacgagacaaatagttaaaaactattaaattgcat |
2344209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 196 - 361
Target Start/End: Complemental strand, 2337162 - 2336997
Alignment:
| Q |
196 |
tatctaataatatgaataggtttcaaactgattgcaacacgaatggctatcctaattacctcttagctagagacacaaatattggagaagccatgagaag |
295 |
Q |
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| T |
2337162 |
tatctaataataagaataggtttcatattgattggaacatgaatggttattctaattacctctgagctagagaggcaaatattggagaagccacgagaag |
2337063 |
T |
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| Q |
296 |
tccaaccataaaatcagatgataaaacaccatcttcaaaattgttcaacttaaaatcccacctgca |
361 |
Q |
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| T |
2337062 |
tccaaccataaaagcagatgacaaaactccatcttcaaaattgttcaatttaaaatcccccctgca |
2336997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 21 - 179
Target Start/End: Complemental strand, 2337694 - 2337536
Alignment:
| Q |
21 |
cacttacgtgcgacaaactgaaatggaccagaaattaaaagaaaaaccacagaagaaggttgctagtgtccaaattgacaatccagatcctataagtcta |
120 |
Q |
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| T |
2337694 |
cacttacatgcgaccgacagaaatggaccagaaattgaaagaaaaaccgcaaaagaaggtcgcaagagtccacaccgacaatccaactcctacaagtcta |
2337595 |
T |
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| Q |
121 |
aatggattgacactgcaaaatacatgaattgtgagaaaggattcttatgacatttaatg |
179 |
Q |
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| T |
2337594 |
aatggatttacactgcaaaatatatgaattgtgagaaaggattcttatgtcagttaatg |
2337536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 196 - 329
Target Start/End: Complemental strand, 2324097 - 2323964
Alignment:
| Q |
196 |
tatctaataatatgaataggtttcaaactgattgcaacacgaatggctatcctaattacctcttagctagagacacaaatattggagaagccatgagaag |
295 |
Q |
| |
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|||| |||| || |||||||||||| |||||| |||| |||||| || ||||||||||| ||||||| | |||||||||||||||||| ||||| |
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| T |
2324097 |
tatcgaatactaagaataggtttcactttgattggaacatgaatggttacattaattacctctgagctagaaatgcaaatattggagaagccacaagaag |
2323998 |
T |
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| Q |
296 |
tccaaccataaaatcagatgataaaacaccatct |
329 |
Q |
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|||| |||||||| ||||||||||||| |||||| |
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| T |
2323997 |
tccacccataaaagcagatgataaaactccatct |
2323964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 21 - 142
Target Start/End: Original strand, 36798681 - 36798802
Alignment:
| Q |
21 |
cacttacgtgcgacaaactgaaatggaccagaaattaaaagaaaaaccacagaagaaggttgctagtgtccaaattgacaatccagatcctataagtcta |
120 |
Q |
| |
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||||||| ||||||| |||| ||||||||||||||| ||||||| ||||||| | |||||||| | ||||||| |||||||||| ||| ||||||||| |
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| T |
36798681 |
cacttacatgcgacagactgtaatggaccagaaattgaaagaaagaccacagcataaggttgcaacagtccaaactgacaatccaactccaataagtcta |
36798780 |
T |
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| Q |
121 |
aatggattgacactgcaaaata |
142 |
Q |
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| T |
36798781 |
aaggggtttacactgcaaaata |
36798802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 271 - 354
Target Start/End: Original strand, 36799331 - 36799414
Alignment:
| Q |
271 |
caaatattggagaagccatgagaagtccaaccataaaatcagatgataaaacaccatcttcaaaattgttcaacttaaaatccc |
354 |
Q |
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| T |
36799331 |
caaatattggagaagctataagaagtccaaccataaaagcagatgaaagaactccatcttgaaaattggtcaagttaaaatccc |
36799414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 271 - 359
Target Start/End: Original strand, 12969622 - 12969710
Alignment:
| Q |
271 |
caaatattggagaagccatgagaagtccaaccataaaatcagatgataaaacaccatcttcaaaattgttcaacttaaaatcccacctg |
359 |
Q |
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|||| ||||||||||| || | ||||||||||||||| ||||||| ||||||||||||| |||||| |||| |||||||||| |||| |
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| T |
12969622 |
caaaaattggagaagcaattaaaagtccaaccataaatgcagatgacaaaacaccatcttgaaaattactcaagttaaaatcccccctg |
12969710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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