View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6522_low_5 (Length: 356)
Name: NF6522_low_5
Description: NF6522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6522_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 19 - 339
Target Start/End: Complemental strand, 40570439 - 40570118
Alignment:
| Q |
19 |
gcatcatggcaacatatattgattatatgtaactgtctctctatgactcaaaattttgatgcgaaaaggtcctatgactgtt-gtgcctaattaaagatt |
117 |
Q |
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| T |
40570439 |
gcatcatggcaacatatattgattatatgtaactgtctctctatgactcaaaattttgatgcgaaaaggtcctatgactgttagtgcctaattaaagatt |
40570340 |
T |
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| Q |
118 |
cgatctcacatgcaaaattcatcattcttcctgcttagggagctttcgttttgttttcttctgaggggaatattggtaaagctatgcgatctagttctgg |
217 |
Q |
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| T |
40570339 |
cgatctcacatgcaaaattcatcattcttcctgcttagggagctttcgttttgttttcttctgaggggaatattggtaaagctatgcgatctagttctgg |
40570240 |
T |
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| Q |
218 |
cttttttaattaataagtaaaagtttatttagataataaagatattagtacttagtacctggatcaatattcaatgaagaacaaagcttaatggtgggac |
317 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40570239 |
cttttttaattaataagcaaaagtttatttagataataaagatattagtacttagtacctggatcaatattcaatgaagaacaaagcttaatggtgggac |
40570140 |
T |
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| Q |
318 |
attgagtattccagttattaca |
339 |
Q |
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|||||||||||||||||||||| |
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| T |
40570139 |
attgagtattccagttattaca |
40570118 |
T |
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