View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6522_low_6 (Length: 339)
Name: NF6522_low_6
Description: NF6522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6522_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 123 - 328
Target Start/End: Original strand, 41921480 - 41921685
Alignment:
| Q |
123 |
agttttgtttaatttttgagaaaacattttaacaacaaatagatatttcaaatttaaagaaattacttactactttatatgccaagacttatgcattttt |
222 |
Q |
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| T |
41921480 |
agttttgtttaatttttgagaaaacattttaacaacaaatagatatttcaaatttaaagaaattacttgctactttatatgccaagacttatgcattttt |
41921579 |
T |
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| Q |
223 |
cctttatctgttcagttatgtcctcacggataatcaccctcttctagctgaggtaggtgtcaaaataatcacaaagtaagcttttttatacacatgaaag |
322 |
Q |
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| T |
41921580 |
ccttaatctgttcagttatgtcctcacggataatcaccctcttctagctgaggtaggtgtcaaaataatcacaaagtaagcttttttatacacatgaaag |
41921679 |
T |
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| Q |
323 |
ttatat |
328 |
Q |
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|||||| |
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| T |
41921680 |
ttatat |
41921685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 41921415 - 41921468
Alignment:
| Q |
18 |
tattgtatttatttatgcaataacgatactagaacaaattcactacttcaagtg |
71 |
Q |
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| T |
41921415 |
tattgtatttatttatgcaataacgatactagaacaaattcactacttcaagtg |
41921468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 149 - 330
Target Start/End: Original strand, 1698822 - 1699003
Alignment:
| Q |
149 |
ttttaacaacaaatagatatttcaaatttaaagaaattacttactactttatatgccaagacttatgcatttt--tcctttatctgttcagttatgtcct |
246 |
Q |
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| T |
1698822 |
ttttaacaacatgtagatatttcaaatttaaataaattacttactacttcatatgctaagac--atgcatttttttcctttatctattcagttatgtcct |
1698919 |
T |
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| Q |
247 |
cacggataatcaccctcttctagctgaggtaggtgtcaaaataatcacaaagtaagcttttttatacacatgaaagttatatat |
330 |
Q |
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| T |
1698920 |
cacggataatcatcctctcctaactgaggtaggtatcaaaataatcacgaagtaaattgttatacacacatgaaagttatatat |
1699003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 223 - 330
Target Start/End: Original strand, 36000637 - 36000744
Alignment:
| Q |
223 |
cctttatctgttcagttatgtcctcacggataatcaccctcttctagctgaggtaggtgtcaaaataatcacaaagtaagcttttttatacacatgaaag |
322 |
Q |
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||||||| ||||||||||||| || | ||||||||||||||| |||| ||||||| || |||||||||||||||||| |||| || |||||| ||| |
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| T |
36000637 |
cctttatttgttcagttatgttcttaaggataatcaccctctcctagttgaggtaagtcccaaaataatcacaaagtacactttaatacacacatcaaaa |
36000736 |
T |
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| Q |
323 |
ttatatat |
330 |
Q |
| |
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|||||||| |
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| T |
36000737 |
ttatatat |
36000744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 160 - 294
Target Start/End: Original strand, 1309963 - 1310097
Alignment:
| Q |
160 |
aatagatatttcaaatttaaagaaattacttactactttatatgccaagacttatgcatttttcctttatctgttcagttatgtcctcacggataatcac |
259 |
Q |
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|||||||||||||||||||||||| |||||||||||||| |||| || |||| | | |||| ||||||| |||||||||||||| |||||| ||||| |
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| T |
1309963 |
aatagatatttcaaatttaaagaagttacttactactttgcatgctaatccttacgtaattttgttttatctattcagttatgtcctaacggatgatcac |
1310062 |
T |
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| Q |
260 |
cctcttctagctgaggtaggtgtcaaaataatcac |
294 |
Q |
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||||| |||| |||||||| |||||||||||| |
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| T |
1310063 |
cctctcctagtcaaggtaggtagcaaaataatcac |
1310097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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