View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6522_low_8 (Length: 302)
Name: NF6522_low_8
Description: NF6522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6522_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 49171189 - 49170896
Alignment:
| Q |
1 |
agtgccataatataattaatcaccactttgttttcaatttattctacttgagttcatgagtttcattcttcaattttagccttgctatttcaaatacatc |
100 |
Q |
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| T |
49171189 |
agtgccataatataattaatcaccactttgttttcaatttattctacttgagttcatgagtttcattcttcaattttagccttgctatttcaaatacatc |
49171090 |
T |
|
| Q |
101 |
taaagccattcccaataacaattgagcaagaaaagtgtaacataccctctctacataactcacgtcaaactcctcttgttagaccagaaaaga-aaaaga |
199 |
Q |
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| T |
49171089 |
taaagccattgccaatcacaattgagcaagaaaagtgtaacctaccctctctacataactcacgtcaaactcctcttgttagaccagaaaagaaaaaaca |
49170990 |
T |
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| Q |
200 |
taaatttgtgattatactctttggcatgtggtcctttctttactatctgtaaacaacaaagttttagagacaaccaagcccttactatattctt |
293 |
Q |
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| T |
49170989 |
taaatttgtgattatactctttggcatgtggtcctttctttactatctgcaaacaacaaagttttagagacaaccaagcccttattatattctt |
49170896 |
T |
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Back To:
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Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 8420926 - 8421210
Alignment:
| Q |
1 |
agtgccataatataattaatcaccactttgttttcaatttattctacttgagttcatgagtttcattcttcaattttagccttgctatttcaaatacatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8420926 |
agtgccataatataattaatcaccactttgttttcaatttattctacttgagttcatgagtttcattcttcaattttagccttgctatttcaaatacatc |
8421025 |
T |
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| Q |
101 |
taaagccattcccaataacaattgagcaagaaaagtgtaacataccctctctacataactcacgtcaaactcctcttgttagaccagaaaagaaaaagat |
200 |
Q |
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|||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
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| T |
8421026 |
taaagccattgccaatcacaattgagcaagaaaagtgtaacctaccctctctacataactcacgtcaaactcctcttgttagacctgaaaagaaaaacat |
8421125 |
T |
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| Q |
201 |
aaatttgtgattatactctttggcatgtggtcctttctttactatctgtaaacaacaaagttttagagacaaccaagcccttact |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
8421126 |
aaatttgtgattatactctttggcatgtggtcctttctttactatctgcaaacaacaaagttttagagacaaccaagaccttact |
8421210 |
T |
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