View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6522_low_9 (Length: 278)
Name: NF6522_low_9
Description: NF6522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6522_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 3 - 158
Target Start/End: Original strand, 3107546 - 3107701
Alignment:
| Q |
3 |
tgtaaaataattatacattgacatagcatattaattaaactctgaacacattgaaacgcaaactatgttacatttaaattcatttttagttaaaatcaat |
102 |
Q |
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| T |
3107546 |
tgtaaaataattatacattgacatagcatattaattaaactctgaacatattgaaacacaaactatgttacatttaaattcatttttaattaaaatcaat |
3107645 |
T |
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| Q |
103 |
tatacaaaatccattaattcaaaacaactctcatcgtcgaagaaccaaacacatac |
158 |
Q |
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| T |
3107646 |
tataaaaaatccattaattcaaaacaactctcatcgtcgaagaaccaaacacatac |
3107701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 262
Target Start/End: Original strand, 3107773 - 3107805
Alignment:
| Q |
230 |
ggacataagttaagaagctaaaaatgaaattat |
262 |
Q |
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| T |
3107773 |
ggacataagttaagaagctaaaaatggaattat |
3107805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 19117322 - 19117363
Alignment:
| Q |
3 |
tgtaaaataattatacattgacatagcatattaattaaactc |
44 |
Q |
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| T |
19117322 |
tgtaaaataattgtacattgacataatatattaattaaactc |
19117363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 6834409 - 6834449
Alignment:
| Q |
3 |
tgtaaaataattatacattgacatagcatattaattaaact |
43 |
Q |
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| T |
6834409 |
tgtaaaataattatacactgacaaaacatattaattaaact |
6834449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 35968253 - 35968294
Alignment:
| Q |
3 |
tgtaaaataattatacattgacatagcatattaattaaactc |
44 |
Q |
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| T |
35968253 |
tgtaaaataattgtacattgacagagcatactaattaaactc |
35968294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 9035052 - 9035011
Alignment:
| Q |
3 |
tgtaaaataattatacattgacatagcatattaattaaactc |
44 |
Q |
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|||||||||||| |||||| |||||| ||||||||||||||| |
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| T |
9035052 |
tgtaaaataattgtacattcacatagtatattaattaaactc |
9035011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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