View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6523_high_1 (Length: 616)
Name: NF6523_high_1
Description: NF6523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6523_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 419; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 10 - 487
Target Start/End: Original strand, 27361548 - 27362025
Alignment:
| Q |
10 |
acatcatcacctatatttcctgtcttcatatccatcaaaatctcaactgcttcatcaaccctacccacataagccaaccctctcaacaaacaattatatg |
109 |
Q |
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| T |
27361548 |
acatcaacacctatatttcctgtcttcatatccatcaaaatctcaactgcttcatcaaccctacccacataagccaaccctctcaacaaacaattatatg |
27361647 |
T |
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| Q |
110 |
cttgtacaccaagcttcaaaccctttctctccnnnnnnnnnnnnncctccatagctttcttcactttccctcttttacaaagggaatttatcaaaacggt |
209 |
Q |
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| T |
27361648 |
cttgtacaccaagcttcaaaccctttctctccaaaaactcaaaaacctccatagctttcttcactttccctcttttacaaagggaatttatcaaaacggt |
27361747 |
T |
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| Q |
210 |
tatagttgcagaatccggttcaaacccattttcaagaacagtaaaaagcactctttttgcttcttcaagttcatttttgctacagtggcaccttatcatg |
309 |
Q |
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| T |
27361748 |
tatagttgcagaatccggttcaaacccattttcaagaacagtaaaaagcactctttttgcttcttcaagttcatttttgctacagtggcaccttatcatg |
27361847 |
T |
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| Q |
310 |
atagagtatgtgcaagaatctggcacaagatgaaaagatgacaactttgtgaacgttgtttgacaaaggtctggtttttgtgcaattactagagccatga |
409 |
Q |
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| T |
27361848 |
atagagtatgtgcaagaatctggtacaagatgaaaagatgacaactttgtgaacattgtttgacaaaagtctggtttttgtgcaattactagagccatga |
27361947 |
T |
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| Q |
410 |
gaaggtgattgaaatctgatattgtttgaatttgaaattcagaagcagttttatctaggatttgtagtagcaattggg |
487 |
Q |
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| T |
27361948 |
gaaggtgattgaaatctgatattgtttgaatttgaaattcagaagcagtgttatctaggatttgtagtagcaattggg |
27362025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 543 - 600
Target Start/End: Original strand, 27362081 - 27362138
Alignment:
| Q |
543 |
ggacctagttgttttgtcctgaaaatcaacgaggttgtagtttgttgtgtgttttgtg |
600 |
Q |
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| T |
27362081 |
ggacctagttgttttgtcctgaaaatcaacgaggttgttgtttgttgtgtgttttgtg |
27362138 |
T |
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