View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6523_high_11 (Length: 367)
Name: NF6523_high_11
Description: NF6523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6523_high_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 21 - 359
Target Start/End: Original strand, 17882274 - 17882612
Alignment:
| Q |
21 |
ggagcagtagaaaacaattcttcaagttcacagggttggagcatcccatcctattgtataacaatgaagtcagttgagaaaatgtccaaaaatgattggg |
120 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17882274 |
ggagcagtagaaaacaattctttaagttcacagggttggagcatcccatcctattgtataacaatgaagtcagttgagaaaatgtccaaaaatgattggg |
17882373 |
T |
|
| Q |
121 |
gagcagcatggaaaagtgaaattattcagggtcattagcacagatgacatacaaaatcactgtcaagttcatcaaaaactgtcttcaagaaatcaattgc |
220 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17882374 |
gagcagcatgaaaaagtgaaattattcagggtcattagcacagatgacatacaaaatcactgtcaagttcatcaaaaactgtcttcaagaaatcaattgc |
17882473 |
T |
|
| Q |
221 |
ttcatttgttaattcaacactctgcagacattaaatccaacgtgaatagaataagatgcaagttccatgttgtcaactaattgaatacaaacaggtataa |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17882474 |
ttcatttgttaattcaacactctgcagacattaaatccaacgtgaatagaataagatgcaagttccatgttgtcaactaattgaatacaaacaggtataa |
17882573 |
T |
|
| Q |
321 |
catactaagaacataaatcatgaggccacaattcatctc |
359 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
17882574 |
catactaagaacataaatcatgaggtcacaattcatctc |
17882612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 106 - 337
Target Start/End: Original strand, 14774988 - 14775216
Alignment:
| Q |
106 |
ccaaaaatgattggggagcagcatggaaaagtgaaattattcagggtcattagcacagatgacatacaaaatcactgtcaagttcatcaaaaactgtctt |
205 |
Q |
| |
|
||||||||||||||| ||||||||| ||| ||||||||| ||||||||||| ||||| || || |||||||||| |||||| ||||||| | | ||| |
|
|
| T |
14774988 |
ccaaaaatgattgggaagcagcatgaaaatgtgaaattagtcagggtcatttgcacaaataactcacaaaatcaccatcaagtccatcaaagattttctc |
14775087 |
T |
|
| Q |
206 |
caagaaatcaattgcttcatttgttaattcaacactctgcagacattaaatccaacgtgaatagaataagatgcaagttccatgttgtcaactaattgaa |
305 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||||||||||| | | |||||||||||||| ||||| | | | ||||| || |||| |
|
|
| T |
14775088 |
caagaaacaaattgcttcatttgttaactcaacactctgcagacattaaatccgatgagaatagaataagat--aagtttcttatactcaac-aaatgaa |
14775184 |
T |
|
| Q |
306 |
tacaaacaggtataacatactaagaacataaa |
337 |
Q |
| |
|
|||||||| |||||||||| ||||||||||| |
|
|
| T |
14775185 |
tacaaacatgtataacatataaagaacataaa |
14775216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 168 - 359
Target Start/End: Original strand, 15049893 - 15050077
Alignment:
| Q |
168 |
catacaaaatcactgtcaagttcatcaaaaactgtcttcaagaaatcaattgcttcatttgttaattcaacactctgcagacattaaatccaacgtgaat |
267 |
Q |
| |
|
||||||||||||| |||| ||||||||| | ||||| |||||||||||||||||||| || |||||||||||||| ||||||||||||||| | || | |
|
|
| T |
15049893 |
catacaaaatcaccatcaaattcatcaaatattgtctccaagaaatcaattgcttcatcagtcaattcaacactctggagacattaaatccaatgagagt |
15049992 |
T |
|
| Q |
268 |
agaataagatgcaagttccatgttgtcaactaattgaatacaaacaggtataacatactaagaacataaatcatgaggccacaattcatctc |
359 |
Q |
| |
|
|| || ||||||||||||||| || ||||||||||||||| |||||||||| ||||| |||| ||||| ||||||||| ||||| |
|
|
| T |
15049993 |
agcat-------aagttccatgttgtcgacaaattgaatacaaacatgtataacatataaagaatataatacatgatgccacaatttatctc |
15050077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 183 - 359
Target Start/End: Original strand, 15017135 - 15017306
Alignment:
| Q |
183 |
tcaagttcatcaaaaactgtcttcaagaaatcaattgcttcatttgttaattcaacactctgcagacattaaatccaacgtgaatagaataagatgcaag |
282 |
Q |
| |
|
|||| ||||||||| | ||||| ||||||||||| |||||||||||| |||||||||||||||| |||||||| |||| | |||||||||||| | || |
|
|
| T |
15017135 |
tcaaattcatcaaagattgtctccaagaaatcaactgcttcatttgtcaattcaacactctgcatacattaaa-ccaatgagaatagaataagttcca-- |
15017231 |
T |
|
| Q |
283 |
ttccatgttgtcaactaattg-aatacaaacaggtataacatactaagaacataaatcatgaggccacaattcatctc |
359 |
Q |
| |
|
|| |||||||| ||||| ||||||||||||||||||||| ||||||||| || || ||||||||| ||||| |
|
|
| T |
15017232 |
---tatattgtcaacaaattgaaatacaaacaggtataacatatagagaacataatacaagatgccacaatttatctc |
15017306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 15049750 - 15049793
Alignment:
| Q |
20 |
cggagcagtagaaaacaattcttcaagttcacagggttggagca |
63 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||| |||| |
|
|
| T |
15049750 |
cggagcagtagaaaacagttcttcaagttcacggggttgcagca |
15049793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 87 - 324
Target Start/End: Complemental strand, 36874788 - 36874551
Alignment:
| Q |
87 |
aagtcagttgagaaaatgtccaaaaatgattggggagcagcatggaaaagtgaaattattcagggtca--ttagcacagatgacatacaaaatcactgtc |
184 |
Q |
| |
|
|||||||| | ||||||||| |||||||||||||||||||| | |||||| |||||||||||||||| | ||| | | ||||||| |||||| || |
|
|
| T |
36874788 |
aagtcagtagtgaaaatgtctgaaaatgattggggagcagcaag-aaaagtaaaattattcagggtcacatgtgcaaa-aggacataccaaatcagcatc |
36874691 |
T |
|
| Q |
185 |
aagttcatcaaaaactgtcttcaagaaatcaattgcttcatttgttaattcaacactctgcagacattaaatccaacgtgaatagaataagatgcaagtt |
284 |
Q |
| |
|
|| | |||||| |||||||||||||||||||||||||| ||| |||||||||||||||| || |||||||||| | |||||||||||||| | | | |
|
|
| T |
36874690 |
aaatgattcaaaagttgtcttcaagaaatcaattgcttcatgtgtcaattcaacactctgcaaacgttaaatccaaagagaatagaataagatataggat |
36874591 |
T |
|
| Q |
285 |
ccatgttgtcaactaattgaatacaaacaggtataacata |
324 |
Q |
| |
|
| | |||||||| ||||||| |||||||||||||||||| |
|
|
| T |
36874590 |
ctaagttgtcaagaaattgaacacaaacaggtataacata |
36874551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University