View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6523_high_12 (Length: 353)
Name: NF6523_high_12
Description: NF6523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6523_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 7 - 334
Target Start/End: Original strand, 3685958 - 3686285
Alignment:
| Q |
7 |
tcgaagaatatagatcacgaacgcatcgcgaactgatgtggcagtaagtgattggttcttataacacatacacactgtgatttccgctcattcatgaact |
106 |
Q |
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| T |
3685958 |
tcgaagaatatagatcacgaacgcatcgcgaactgatgtggcagtaagtgattggttcttttaacacatacacactgtgatttccgctcattcatgaact |
3686057 |
T |
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| Q |
107 |
atacacaacttcttcctttataattaccacacgtatcgattcgggaagatcgttatgaggtgtgttcttgataaatagcagtactagaaataaaatatga |
206 |
Q |
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| T |
3686058 |
atacacaacttcttcctttataattaccacacgtatcgattcgggaagatcgttatgaggtgtgttcttgataaatagcagtactagaaaaaaaatatga |
3686157 |
T |
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| Q |
207 |
cagttatgttagggagaaaagaaaaaagaaagtggttacttgctagttgctgagtggttttgtgagggagtgaccaagctctagatatcgtcatttctgc |
306 |
Q |
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| T |
3686158 |
cagttatgttagggagaaaagaaaaaagaaagtggttacttgctagttgccgagtggttttgtgagggagggaccaagctctagatatcgtcatttctgc |
3686257 |
T |
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| Q |
307 |
taaggcatctagatatggaatttgtttg |
334 |
Q |
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|||||||| |||||||||||||||||| |
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| T |
3686258 |
caaggcatcaagatatggaatttgtttg |
3686285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 8 - 207
Target Start/End: Original strand, 3693725 - 3693925
Alignment:
| Q |
8 |
cgaagaatatagatcacgaacgcatcgcgaactgatgtggcagtaagtgattggtt-cttataacacatacacactgtgatttccgctcattcatgaact |
106 |
Q |
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| T |
3693725 |
cgaagaatattgatcaataacgcatcacgaactgatttggcagtaagtgattggtttcttataacacatacacactgtgatttccgctcattcctgaacc |
3693824 |
T |
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| Q |
107 |
atacacaacttcttcctttataattaccacacgtatcgattcgggaagatcgttatgaggtgtgttcttgataaatagcagtactagaaataaaatatga |
206 |
Q |
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| T |
3693825 |
atacactgcttcttcctttataattacaacacgtatcgattcgggaagatcatgatgaggtgtgtttttgataaacaacagtactagaaataaaatatga |
3693924 |
T |
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| Q |
207 |
c |
207 |
Q |
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| T |
3693925 |
c |
3693925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 26 - 214
Target Start/End: Original strand, 3679213 - 3679409
Alignment:
| Q |
26 |
aacgcatcgcgaactgatgtggcagtaagtgattggtt-cttataacacatacacactgtgatttccgctcattcatgaactatacacaacttcttcctt |
124 |
Q |
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| T |
3679213 |
aacgcatcacgaattgatttggcagcaagtgattggtttcttataacacatacacgctgtgatttccgctcattcctgaactatacactacttctt-ctt |
3679311 |
T |
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| Q |
125 |
tataattaccac----ac---gtatcgattcgggaagatcgttatgaggtgtgttcttgataaatagcagtactagaaat-aaaatatgacagttatg |
214 |
Q |
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| T |
3679312 |
aataattacaacgtgtacggtgtatcgattcgggaagatcgtgatgaggcatgttcttgataaatagcagtactagaaatgaaaatatgacagttatg |
3679409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 8 - 202
Target Start/End: Original strand, 3675532 - 3675716
Alignment:
| Q |
8 |
cgaagaatatagatcacgaacgcatcgcgaactgatgtggcagtaagtgattggttcttataacacatacacactgtgatttccgctcattcatgaacta |
107 |
Q |
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|||||||||||||||||||||||||| | ||||||||||| ||||| |||||||| ||| |||| |||||||||||||| |||||| |
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| T |
3675532 |
cgaagaatatagatcacgaacgcatcacaaactgatgtggttataagt----------tataacacttacgtgctgtcatttccgctcattccagaacta |
3675621 |
T |
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| Q |
108 |
tacacaacttcttcctttataattaccacacgtatcgattcgggaagatcgttatgaggtgtgttcttgataaatagcagtactagaaataaaat |
202 |
Q |
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| T |
3675622 |
tacactgcttcttcctttataattacaacacgaatcgattcgggaagatcatggtgagatgtgttcttgataaatagtagtactagaaataaaat |
3675716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 334
Target Start/End: Original strand, 3703297 - 3703333
Alignment:
| Q |
298 |
catttctgctaaggcatctagatatggaatttgtttg |
334 |
Q |
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| T |
3703297 |
catttttgctaaggcatctagatatggaatttatttg |
3703333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 34676634 - 34676702
Alignment:
| Q |
220 |
gagaaaagaaaaaagaaagtggttacttgctagttgctgagtggttttgtgagggagtgaccaagctct |
288 |
Q |
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| T |
34676634 |
gagaaaagaaaagggaaagtggttattgggtagttcttgagtggttatgtgagggagagacaaagctct |
34676702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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