View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6523_high_2 (Length: 470)
Name: NF6523_high_2
Description: NF6523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6523_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 235 - 450
Target Start/End: Complemental strand, 44250321 - 44250104
Alignment:
| Q |
235 |
gcctgcatttttaaagtttcttctctttgcttctgtgaatctctggccataacaattgcttggtaggggtttttgacaaaatttggatctgcattttctt |
334 |
Q |
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| T |
44250321 |
gcctgcatttttaaagtttcttctctttgcttctgtgaatctctggccatgacaattgcttggtaggggtttttgacaaaatttggatctgcattttctt |
44250222 |
T |
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| Q |
335 |
tcagcacattgccttttgtttttctcgcagccactgaaaaaagac--ataacgtcaatctctaattctctatcttaaaatcaaacttggtatgattaatc |
432 |
Q |
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| T |
44250221 |
tcagcacattgccttttgtttttctcgcagccactgaaaaaagacatataacgtcaatctctaattctctatcttaaaatcaaacttggtatgattaatc |
44250122 |
T |
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| Q |
433 |
atatttatgcattgccac |
450 |
Q |
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|||||||||||||||||| |
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| T |
44250121 |
atatttatgcattgccac |
44250104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 44250555 - 44250384
Alignment:
| Q |
1 |
agaaaagaattaagcatttaaactttggttaatgaagcttactggtgcatggtgtctctgatcattttctctagcatggttctgtaagaagattgagctt |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44250555 |
agaaaagaattaagcatttcaactttggttaatgaagcttactggtgcatggtgtctctgatcattttctctagcatggttctgtaagaagattgagctt |
44250456 |
T |
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| Q |
101 |
ccgctaaccgtctgcatttttctgctttcctcttacgttttataagtgtcatttcgagatcttgaataacaa |
172 |
Q |
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| T |
44250455 |
ccgctaaccgtctgcatttttctgctttcctcttacgttttataagtgtcatttcgagatcttgaataacaa |
44250384 |
T |
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