View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6523_high_20 (Length: 238)
Name: NF6523_high_20
Description: NF6523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6523_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 7235010 - 7234863
Alignment:
| Q |
1 |
aaagattactcttttagtagttaattcttgaagtttt-gtggtttcaacaatggaagaagatcaagaagtgatgaaattgaaacatgtgtgcaaattctg |
99 |
Q |
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| T |
7235010 |
aaagattactcttttagtagttaattcttgaagtttttgtggtttcaacaatggaagaagatcaagaagtgatgaaattgaaacatgtgtgcaaattctg |
7234911 |
T |
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| Q |
100 |
cagaaaaagttttgcttctggtaaatcattaggtggtcacatgaggtc |
147 |
Q |
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| T |
7234910 |
cagaaaaagttttgcttctggtaaatcattaggtggtcacatgaggtc |
7234863 |
T |
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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 108
Target Start/End: Original strand, 30641659 - 30641756
Alignment:
| Q |
5 |
attactcttttagtagttaattcttgaa-gttttgtggtttcaacaatggaagaagatcaagaagtgatgaaattgaaacatgtgtgcaaattctgcaga |
103 |
Q |
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| T |
30641659 |
attactcttttagtggttaattcttgaaggttttgt-gtttcaacaatggaagaagatcaagaaatga------tgaaacatgtgtgcaaattctgcaga |
30641751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 108
Target Start/End: Complemental strand, 26365749 - 26365657
Alignment:
| Q |
10 |
tcttttagtagttaattcttgaag-ttttgtggtttcaacaatggaagaagatcaagaagtgatgaaattgaaacatgtgtgcaaattctgcagaaaaag |
108 |
Q |
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| T |
26365749 |
tcttttagtggttaattcttgaaggttttgtg-tttcaacaatggaagaagatcaagaaatga------tgaaacatgtgtgcaaattctgcagaaaaag |
26365657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 147
Target Start/End: Complemental strand, 45405320 - 45405248
Alignment:
| Q |
75 |
aattgaaacatgtgtgcaaattctgcagaaaaagttttgcttctggtaaatcattaggtggtcacatgaggtc |
147 |
Q |
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| T |
45405320 |
aattcaaacatgcttgcaaattctgtagcaaaagctttccttgtggtagatctttaggaggtcacatgaggtc |
45405248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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