View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6523_low_14 (Length: 300)
Name: NF6523_low_14
Description: NF6523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6523_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 8 - 283
Target Start/End: Complemental strand, 4488504 - 4488229
Alignment:
| Q |
8 |
gagcagagaaaggtaagatattgttcttcatgaatattaatttgaacaaatagtgcactataggaactgcattcttatactattgttgaaacaggtgcat |
107 |
Q |
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| T |
4488504 |
gagcagagaaaggtaagatattgttcttcatgaatattaatttgaacaaatagtgcactataggaactgcattcttatactattgttgaaacaggtgcat |
4488405 |
T |
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| Q |
108 |
gtagaagttgtagtgattgaatcagatgatgtggcatctgcagtggcagaggaagtaatgaagtatgctataacgaaattggtcgttggagcttcaatgg |
207 |
Q |
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| T |
4488404 |
gtagaagttgtagtgattgaatcagatgatgtggcatctgcagtggcagaggaagtgatgaagtatgctataacgaaattggtcgttggagcttcaatgg |
4488305 |
T |
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| Q |
208 |
gtggcttatttaaaaggtacttctataatgacagcaaaatcattttagcatttaccttgactaataaagatttatt |
283 |
Q |
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| T |
4488304 |
gtggcttatttaaaaggtacttctataatgacagcaaaatcattttagcatttaccttgactaataaagatttatt |
4488229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 8 - 228
Target Start/End: Complemental strand, 1409826 - 1409606
Alignment:
| Q |
8 |
gagcagagaaaggtaagatattgttcttcatgaatattaatttgaacaaatagtgcactataggaactgcattcttatactattgttgaaacaggtgcat |
107 |
Q |
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| T |
1409826 |
gagcagagaaaggtaagatattgttcttcatgaagattaatttgaacaaatagtgcactataggaactgcattcttatactattgttgaaacaggtgcat |
1409727 |
T |
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| Q |
108 |
gtagaagttgtagtgattgaatcagatgatgtggcatctgcagtggcagaggaagtaatgaagtatgctataacgaaattggtcgttggagcttcaatgg |
207 |
Q |
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| T |
1409726 |
gtagaagttgtagtgattgaatcagatgatgtggcatctgcggtggcagaggaagtaaccaagtatgctgtaacgaaattggtcgttggagcttcaaccg |
1409627 |
T |
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| Q |
208 |
gtggcttatttaaaaggtact |
228 |
Q |
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| T |
1409626 |
gtggcttatttaaaaggtact |
1409606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 1402874 - 1402810
Alignment:
| Q |
100 |
aggtgcatgtagaagttgtagtgattgaatcagatgatgtggcatctgcagtggcagaggaagta |
164 |
Q |
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| T |
1402874 |
aggtgcatgtagatgtagtagtgattgaatcagatgatgtagcaactgcagtagcagaggaagta |
1402810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 202 - 283
Target Start/End: Complemental strand, 19023911 - 19023830
Alignment:
| Q |
202 |
caatgggtggcttatttaaaaggtacttctataatgacagcaaaatcattttagcatttaccttgactaataaagatttatt |
283 |
Q |
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| T |
19023911 |
caatgggtggcttatttaaaaggtacttctataatgacagcaaaatcattttagcatctaccttgactaataatgatttatt |
19023830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 11955434 - 11955361
Alignment:
| Q |
104 |
gcatgtagaagttgtagtgattgaatcagatgatgtggcatctgcagtggcagaggaagtaatgaagtatgcta |
177 |
Q |
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| T |
11955434 |
gcatgtagatattttagtgattgaataagatgatgtagcaactgcaatagcagaggaagtagttaaggatgcta |
11955361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 203
Target Start/End: Original strand, 40682223 - 40682322
Alignment:
| Q |
104 |
gcatgtagaagttgtagtgattgaatcagatgatgtggcatctgcagtggcagaggaagtaatgaagtatgctataacgaaattggtcgttggagcttca |
203 |
Q |
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| T |
40682223 |
gcatgtagatgttttagtgattgaatcagatgatgtagcaattgcaatagcagaggaagtagctaaggatgctataaccaaacttgtccttggagcttca |
40682322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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