View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6523_low_16 (Length: 252)

Name: NF6523_low_16
Description: NF6523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6523_low_16
NF6523_low_16
[»] chr4 (2 HSPs)
chr4 (74-252)||(42206463-42206641)
chr4 (10-38)||(42206399-42206427)


Alignment Details
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 74 - 252
Target Start/End: Original strand, 42206463 - 42206641
Alignment:
Q  74 cattatttcaaatcaaatgaacctttttaattttgcgtggttcaagtggtcggtggtttgagtctcttgagcatgtggtcatggttcaatctctaactca 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42206463 cattatttcaaatcaaatgaacctttttaattttgcgtggttcaagtggtcggtggtttgagtctcttgagcatgtggtcatggttcaatctctaactca 42206562  T
Q  174 tttgtattaaaattcaccatttgagaaagacaactcttaaatgtgcttcgaattttcgaatgaattagatgcagttgca 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  42206563 tttgtattaaaattcaccatttgagaaagacaactcttaaatgtgcttcgagttttcgaatgaattagatgcagttgca 42206641  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Original strand, 42206399 - 42206427
Alignment:
Q  10 attattctatctgtaagggagaatatttg 38  Q
    |||||||||||||||||||||||||||||    
T  42206399 attattctatctgtaagggagaatatttg 42206427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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