View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6523_low_17 (Length: 251)
Name: NF6523_low_17
Description: NF6523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6523_low_17 |
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| [»] chr1 (4 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 46935925 - 46936168
Alignment:
| Q |
8 |
cagcacagaggataggtacctctcaccaaagctagggaaaacaacctgcaccatatcaaaatgaaaattgtcaatgatgtaaacccnnnnnnnncctata |
107 |
Q |
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| T |
46935925 |
cagcacagaggataggtacctctcaccaaagctagggaaaacaacctgcaccatatcaaaatgaaaattgtcaatgatgtaaacccttttttttcctata |
46936024 |
T |
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| Q |
108 |
acataccaactgtgccagatattcaaaatatttttatcaaaatttctatggattcaatcaacttacaacaataagctttccagcattttctggtcttttt |
207 |
Q |
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| T |
46936025 |
acataccaactgtgccagatattcaaaatatttttatcaaaatttttatggattcaatcaacttacaacaataagctttccagcattttctggtcttttt |
46936124 |
T |
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| Q |
208 |
gctatcttaatggcagctgccgcagcagctccagatgatattcc |
251 |
Q |
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| T |
46936125 |
gctatcttaatggcagctgccgcagcagctccagatgatattcc |
46936168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 167 - 251
Target Start/End: Complemental strand, 36289077 - 36288993
Alignment:
| Q |
167 |
aacttacaacaataagctttccagcattttctggtctttttgctatcttaatggcagctgccgcagcagctccagatgatattcc |
251 |
Q |
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| T |
36289077 |
aacttacaacaatgagctttcctgcattttctggtctcttccctagttttattgcagctgctgcagcagctcctgatgaaattcc |
36288993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 36284059 - 36284023
Alignment:
| Q |
167 |
aacttacaacaataagctttccagcattttctggtct |
203 |
Q |
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| T |
36284059 |
aacttacaacaatgagctttcctgcattttctggtct |
36284023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 251
Target Start/End: Complemental strand, 36294642 - 36294559
Alignment:
| Q |
167 |
aacttacaacaataagctttccagcattttctggtctttttgctatcttaatggcagctgccgcagcagctccagatgatattcc |
251 |
Q |
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| T |
36294642 |
aacttacaacaatgagctttcctgcattttcttgtc-tcttcctaattttatggcagctgctgctgcagctcctgatgaaattcc |
36294559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 168 - 251
Target Start/End: Complemental strand, 864334 - 864251
Alignment:
| Q |
168 |
acttacaacaataagctttccagcattttctggtctttttgctatcttaatggcagctgccgcagcagctccagatgatattcc |
251 |
Q |
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|||||||||||||||||| |||||||||||||| ||||| ||||||||||| ||||| || || ||||||||||| |||||||| |
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| T |
864334 |
acttacaacaataagcttcccagcattttctggccttttggctatcttaatcgcagcggcagctgcagctccagaagatattcc |
864251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 865224 - 865163
Alignment:
| Q |
9 |
agcacagaggataggtacctctcaccaaagctagggaaaacaacctgcaccatatcaaaatg |
70 |
Q |
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| T |
865224 |
agcacagaggacaggtacctctcgccaaagcttggaaaaacgacctgcaccatgtcaaaatg |
865163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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