View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6523_low_20 (Length: 241)
Name: NF6523_low_20
Description: NF6523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6523_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 42206777 - 42207001
Alignment:
| Q |
1 |
tcattctaattttaaacatgtatctaccaggtagtggttggtagttttatggcaggaaaccaacatgagcagaagccaagaaatcagaaacatgatgtgg |
100 |
Q |
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| T |
42206777 |
tcattctaattttaaacatgtatctaccaggtagtggttggtagttttatggcaggaaaccaacatgagcagaagccaagaaatcagaaacatgatgtgg |
42206876 |
T |
|
| Q |
101 |
tatcaactgtgtcatctcctgctgttgttcccattcctactcttgatccaatacctattctatcatcagtaacttccttccgtggagataattggtctgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42206877 |
tatcaactgtgtcatctcctgctgttgttcccattcctactcttgatccaatacctattctatcatcagtaacttccttccgtggagataattggtctgc |
42206976 |
T |
|
| Q |
201 |
tgtgccagcatcggatgcaaaggat |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
42206977 |
tgtgccagcatcggatgcaaaggat |
42207001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 64 - 225
Target Start/End: Complemental strand, 19085136 - 19084986
Alignment:
| Q |
64 |
catgagcagaagccaagaaatcagaaacatgatgtggtatcaactgtgtcatctcctgctgttgttcccattcctactcttgatccaatacctattctat |
163 |
Q |
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| T |
19085136 |
catgagcagaagccaagaaatcagaaacacgatgtggtgtcaactgtgtcatctcctgctgttgttcccatacctactctt-----------tattctat |
19085048 |
T |
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| Q |
164 |
catcagtaacttccttccgtggagataattggtctgctgtgccagcatcggatgcaaaggat |
225 |
Q |
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| T |
19085047 |
catcagtaacttccttccgtggaaataatcggtctgatgtgcaagcattagatgcaaaggat |
19084986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 64 - 225
Target Start/End: Complemental strand, 30908128 - 30907978
Alignment:
| Q |
64 |
catgagcagaagccaagaaatcagaaacatgatgtggtatcaactgtgtcatctcctgctgttgttcccattcctactcttgatccaatacctattctat |
163 |
Q |
| |
|
|||||||| |||||||||||||| ||||| |||||||| ||||||||||||||| |||||||||||||||| ||||||||| |||||||| |
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| T |
30908128 |
catgagcataagccaagaaatcataaacacgatgtggtgtcaactgtgtcatcttctgctgttgttcccatacctactctt-----------tattctat |
30908040 |
T |
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| Q |
164 |
catcagtaacttccttccgtggagataattggtctgctgtgccagcatcggatgcaaaggat |
225 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||| |
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| T |
30908039 |
catcagtaacttccttccgtggagataattggtctgatgtgcaagcattagatgcaaaggat |
30907978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 64 - 225
Target Start/End: Original strand, 50991268 - 50991418
Alignment:
| Q |
64 |
catgagcagaagccaagaaatcagaaacatgatgtggtatcaactgtgtcatctcctgctgttgttcccattcctactcttgatccaatacctattctat |
163 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||| |||||||||||||||| || |||||||||||| ||||||||| |||||||| |
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| T |
50991268 |
catgagcagaagccaagaaatcagaaacacgatgtggtgtcaactgtgtcatctcatgttgttgttcccatacctactctt-----------tattctat |
50991356 |
T |
|
| Q |
164 |
catcagtaacttccttccgtggagataattggtctgctgtgccagcatcggatgcaaaggat |
225 |
Q |
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||||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||||| |
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| T |
50991357 |
catcagtaacttccttccgtggatttaattggtctgatgtgcaagcattagatgcaaaggat |
50991418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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