View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6523_low_22 (Length: 205)

Name: NF6523_low_22
Description: NF6523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6523_low_22
NF6523_low_22
[»] scaffold0174 (2 HSPs)
scaffold0174 (113-175)||(30490-30552)
scaffold0174 (160-205)||(30562-30607)
[»] chr2 (6 HSPs)
chr2 (113-174)||(4730610-4730671)
chr2 (160-205)||(4730682-4730727)
chr2 (166-203)||(39711724-39711761)
chr2 (166-205)||(35243106-35243145)
chr2 (177-205)||(12419559-12419587)
chr2 (177-205)||(12431619-12431647)
[»] chr1 (2 HSPs)
chr1 (128-177)||(2688520-2688569)
chr1 (160-205)||(2688467-2688512)
[»] chr4 (1 HSPs)
chr4 (154-205)||(21481177-21481228)
[»] chr7 (2 HSPs)
chr7 (177-205)||(10623350-10623378)
chr7 (173-205)||(28302175-28302207)
[»] chr6 (1 HSPs)
chr6 (154-205)||(17459209-17459258)


Alignment Details
Target: scaffold0174 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 113 - 175
Target Start/End: Original strand, 30490 - 30552
Alignment:
Q  113 agagctgagattggtgggtgcagtcttgaccttttgctttcgtttcataaactcgaaagggtc 175  Q
    ||||||||||||||||||||||| ||||||||||||| || ||||||||||| ||||||||||    
T  30490 agagctgagattggtgggtgcagacttgaccttttgcgttggtttcataaacccgaaagggtc 30552  T

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Target: scaffold0174; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 30562 - 30607
Alignment:
Q  160 taaactcgaaagggtctgtttggttactaacgtattggactcatcc 205  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  30562 taaacccgaaagggtctgtttggttactaacgtattggactcatcc 30607  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 113 - 174
Target Start/End: Original strand, 4730610 - 4730671
Alignment:
Q  113 agagctgagattggtgggtgcagtcttgaccttttgctttcgtttcataaactcgaaagggt 174  Q
    ||||||||||||| ||||||||| |||||||||||||||| ||||||||| | |||||||||    
T  4730610 agagctgagattgatgggtgcagacttgaccttttgctttggtttcataatcccgaaagggt 4730671  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 4730682 - 4730727
Alignment:
Q  160 taaactcgaaagggtctgtttggttactaacgtattggactcatcc 205  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  4730682 taaacccgaaagggtctgtttggttactaacgtattggactcatcc 4730727  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 203
Target Start/End: Complemental strand, 39711761 - 39711724
Alignment:
Q  166 cgaaagggtctgtttggttactaacgtattggactcat 203  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  39711761 cgaaagggtctgtttggttactaacgtattgaactcat 39711724  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 166 - 205
Target Start/End: Original strand, 35243106 - 35243145
Alignment:
Q  166 cgaaagggtctgtttggttactaacgtattggactcatcc 205  Q
    ||||||||||||||||||||||| |||| |||||||||||    
T  35243106 cgaaagggtctgtttggttactagcgtaatggactcatcc 35243145  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 205
Target Start/End: Complemental strand, 12419587 - 12419559
Alignment:
Q  177 gtttggttactaacgtattggactcatcc 205  Q
    |||||||||||||||||||||||||||||    
T  12419587 gtttggttactaacgtattggactcatcc 12419559  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 205
Target Start/End: Complemental strand, 12431647 - 12431619
Alignment:
Q  177 gtttggttactaacgtattggactcatcc 205  Q
    |||||||||||||||||||||||||||||    
T  12431647 gtttggttactaacgtattggactcatcc 12431619  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 128 - 177
Target Start/End: Complemental strand, 2688569 - 2688520
Alignment:
Q  128 gggtgcagtcttgaccttttgctttcgtttcataaactcgaaagggtctg 177  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  2688569 gggtgcagtcttgaccttttgctttggtttcataaacccgaaagggtctg 2688520  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 2688512 - 2688467
Alignment:
Q  160 taaactcgaaagggtctgtttggttactaacgtattggactcatcc 205  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||    
T  2688512 taaacccgaaagagtctgtttggttactaacgtattggactcatcc 2688467  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 154 - 205
Target Start/End: Complemental strand, 21481228 - 21481177
Alignment:
Q  154 gtttcataaactcgaaagggtctgtttggttactaacgtattggactcatcc 205  Q
    |||||| ||||||||||||||||||||||||||| ||| |||||||||||||    
T  21481228 gtttcaaaaactcgaaagggtctgtttggttactcacgaattggactcatcc 21481177  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 205
Target Start/End: Original strand, 10623350 - 10623378
Alignment:
Q  177 gtttggttactaacgtattggactcatcc 205  Q
    |||||||||||||||||||||||||||||    
T  10623350 gtttggttactaacgtattggactcatcc 10623378  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 28302207 - 28302175
Alignment:
Q  173 gtctgtttggttactaacgtattggactcatcc 205  Q
    |||| ||||||||||||||||||||||||||||    
T  28302207 gtctatttggttactaacgtattggactcatcc 28302175  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 205
Target Start/End: Complemental strand, 17459258 - 17459209
Alignment:
Q  154 gtttcataaactcgaaagggtctgtttggttactaacgtattggactcatcc 205  Q
    |||||| |||| |||||||||||||  | |||||||||||||||||||||||    
T  17459258 gtttcaaaaacccgaaagggtctgt--gattactaacgtattggactcatcc 17459209  T

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