View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6523_low_3 (Length: 469)

Name: NF6523_low_3
Description: NF6523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6523_low_3
NF6523_low_3
[»] chr2 (1 HSPs)
chr2 (19-469)||(44716131-44716583)


Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 19 - 469
Target Start/End: Original strand, 44716131 - 44716583
Alignment:
Q  19 caattgtttattatgtagggtatagaaattgatacatgcatggatatatggcatggccatctccacgtcaaatgtcgtaagcaaaaagacgcgacaagaa 118  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44716131 caattgtttattatgtagggtatggaaattgatacatgcatggatatatggcatggccatctccacgtcaaatgtcgtaagcaaaaagacgcgacaagaa 44716230  T
Q  119 nnnnnnnaaaataaatacgacaggaactttttgggtgaagtttcaaactttaattttgggtgaaatttcaaactttataatttccttatgattgaataat 218  Q
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  44716231 tttttttaaaataaatacgacaggaactttttgggtgaagtttcaaactttatttttgggtgaaatttcaaactttataatttccttatgattgaataat 44716330  T
Q  219 aaaattcgtatttgaaataataattagtta---aatagtccagtannnnnnnnccccgaattagaatatacatctttgatctttgtaattattaaacttc 315  Q
     |||||||||||||||||||||||||||||   ||||||||||||        ||||||||||||||||||||||||||||||||||||| |||||||||    
T  44716331 caaattcgtatttgaaataataattagttaaataatagtccagta-tttttttccccgaattagaatatacatctttgatctttgtaattgttaaacttc 44716429  T
Q  316 tatcaaaatggccacttctagcatggaaccaaggctgattctgctagtagttaactcataatcctccatggacgtatgttcatgttgtcagcataagaac 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  44716430 tatcaaaatggccacttctagcatggaaccaaggctgattctgctagtagttaactcataatcctccatggacgtatgttcatgatgtcagcattagaac 44716529  T
Q  416 taatgatccgtaaatacttatgtcagtgctctttgagcgttcatctcagtcgac 469  Q
    ||||||||||||||||||||||||||||||||||||||||| || || ||||||    
T  44716530 taatgatccgtaaatacttatgtcagtgctctttgagcgttgatatctgtcgac 44716583  T

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