View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6523_low_4 (Length: 460)

Name: NF6523_low_4
Description: NF6523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6523_low_4
NF6523_low_4
[»] chr7 (17 HSPs)
chr7 (1-443)||(22037105-22037546)
chr7 (134-443)||(22021411-22021720)
chr7 (36-439)||(22039969-22040378)
chr7 (1-287)||(18326423-18326709)
chr7 (133-283)||(22011030-22011189)
chr7 (20-203)||(18322643-18322833)
chr7 (133-287)||(16839111-16839267)
chr7 (133-287)||(16846194-16846350)
chr7 (35-99)||(22023091-22023155)
chr7 (386-440)||(22028650-22028704)
chr7 (22-76)||(22024957-22025011)
chr7 (135-210)||(22028877-22028954)
chr7 (171-287)||(22019535-22019654)
chr7 (386-438)||(18326245-18326297)
chr7 (321-354)||(16839301-16839334)
chr7 (321-354)||(16846384-16846417)
chr7 (308-352)||(22028735-22028779)
[»] chr3 (1 HSPs)
chr3 (133-287)||(3866064-3866227)
[»] chr2 (2 HSPs)
chr2 (171-210)||(10205208-10205247)
chr2 (387-436)||(10205439-10205488)


Alignment Details
Target: chr7 (Bit Score: 394; Significance: 0; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Complemental strand, 22037546 - 22037105
Alignment:
Q  1 gagaaggaatttctcttgtgtgaattaccttaaatataaaagcaaaagaaattcattcaatggcgagattgtcaaactgtttccattagccaaaataatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  22037546 gagaaggaatttctcttgtgtgaattaccttaaatataaaagcaaaagaaattcattcaatggagagat-gtcaaactgtttccattagccaaaataatt 22037448  T
Q  101 aaataaaagccatcatataaattaatcccagaacaagaattaacagaaattcaaataaatttgaagagggacttactttcaatgacagaaaaccaagctt 200  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22037447 aaataaaagccattatataaattaatcccagaacaagaattaacagaaattcaaataaatttgaagagggacttactttcaatgacagaaaaccaagctt 22037348  T
Q  201 tcaacataatcattgatatagatccacgagctttccccattggtaattctagttttctctatgctaccatctctcaaattatagacagcaaattcatgtt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22037347 tcaacataatcattgatatagatccacgagctttccccattggtaattctagttttctctatgctaccatctctcaaattatagacagcaaattcatgtt 22037248  T
Q  301 caagagtgcttcccagtatcagtgtatcataatttttagaaaggtgcaatggcacccatgccgaccactcatcaannnnnnncagaatttgaagattaat 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  22037247 caagagtgcttcccagtatcagtgtatcataatttttagaaaggtgcaatggcacccatgccgaccactcatcaatttttttcagaatttgaagattaat 22037148  T
Q  401 cttgagtaattgagtccaagaatcttcaactccataatccatc 443  Q
    || ||||||||||||||||||||| ||| ||||||||||||||    
T  22037147 ctcgagtaattgagtccaagaatcatcatctccataatccatc 22037105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 134 - 443
Target Start/End: Complemental strand, 22021720 - 22021411
Alignment:
Q  134 caagaattaacagaaattcaaataaatttgaagagggacttactttcaatgacagaaaaccaagctttcaacataatcattgatatagatccacgagctt 233  Q
    |||||||||||||||| | |||||||||  |||||| ||||||||||||||||| |||||||||||||||||||| |  ||||||||||||||||||| |    
T  22021720 caagaattaacagaaaataaaataaattgaaagaggaacttactttcaatgacacaaaaccaagctttcaacatatttcttgatatagatccacgagcat 22021621  T
Q  234 tccccattggtaattctagttttctctatgctaccatctctcaaattatagacagcaaattcatgttcaagagtgcttcccagtatcagtgtatcataat 333  Q
    || |||||||||||| |||||||||| |  |||||||||||||||||||| ||| |   | |||  ||||   || || ||| |||||||||||||||||    
T  22021620 tcaccattggtaattatagttttctcaacactaccatctctcaaattatatacaactgttacatcatcaaccttgttttccaatatcagtgtatcataat 22021521  T
Q  334 ttttagaaaggtgcaatggcacccatgccgaccactcatcaannnnnnncagaatttgaagattaatcttgagtaattgagtccaagaatcttcaactcc 433  Q
    ||||||| ||||||||||||||||||||||||||||||||||       ||||||||||||||| || || ||||||||||||||||| |||||||||||    
T  22021520 ttttagagaggtgcaatggcacccatgccgaccactcatcaattggtttcagaatttgaagattgattttaagtaattgagtccaagattcttcaactcc 22021421  T
Q  434 ataatccatc 443  Q
    ||||||||||    
T  22021420 ataatccatc 22021411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 36 - 439
Target Start/End: Complemental strand, 22040378 - 22039969
Alignment:
Q  36 ataaaagcaaaagaaattcat---tcaatggcgagattgtcaaactgtttccattagccaaaataattaaataaaagccatcatataaattaatcccaga 132  Q
    ||||| |||||||||||||||   ||||||| ||||||||||||||| | ||| | |||||| |||| ||||||||||||||||||||| |||||   ||    
T  22040378 ataaaggcaaaagaaattcatgattcaatggagagattgtcaaactggtaccaattgccaaa-taatcaaataaaagccatcatataaaataatcattga 22040280  T
Q  133 acaagaattaacagaaattcaaataaatttgaagagggacttactttcaatgacagaaaaccaagctttcaacataatcattgatatagatccacgagct 232  Q
    ||||||| ||||||||||| |||||||||| ||| || ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||  ||||     
T  22040279 acaagaactaacagaaattaaaataaatttaaagcggcacttactttcaatgacacaaaaccaagctttcaacatagtcattgatatagatccttgagca 22040180  T
Q  233 ttccccattggtaattctagttttctctatgctaccatctctcaaattatagacagcaaattcatgttcaagagtgcttcccagtatcagtgtatcataa 332  Q
    |||  |||||||||||||| || |||||| ||||||||||||||||||||||| | |   |   | |||| || || || ||| || |||||||||| ||    
T  22040179 ttcagcattggtaattctaattctctctacgctaccatctctcaaattatagaaaactggtatgtattcaggattggtttccaataacagtgtatcaaaa 22040080  T
Q  333 tttttagaaaggtgcaatggcacccatgccgaccactc----atcaannnnnnncagaatttgaagattaatcttgagtaattgagtccaagaatcttca 428  Q
    |||||||||||||||||||| ||||||| |   | |||    |  ||       || |||||||| ||||||||| ||||||||||||||||| ||||||    
T  22040079 tttttagaaaggtgcaatggaacccatggcaggccctcaaaaagtaaattttttcataatttgaaaattaatcttaagtaattgagtccaagactcttca 22039980  T
Q  429 actccataatc 439  Q
    |||||||||||    
T  22039979 actccataatc 22039969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 18326709 - 18326423
Alignment:
Q  1 gagaaggaatttc-tcttgtgtgaattaccttaaatataaaagcaaaagaaattcattcaatggcgagattgtcaaactgtttccattagccaaaataat 99  Q
    ||||||||||||| | ||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||| ||| |||||||||||||    
T  18326709 gagaaggaatttcattttgggtgaattacct-aaatataaaagcaaaagaaattcattcaatggagagattgtcaaaccgttaccaatagccaaaataat 18326611  T
Q  100 taaataaaagccatcatataaattaatcccagaacaagaattaacagaaattcaaataaat--ttgaagagggacttactttcaatgacagaaaaccaag 197  Q
     |||||||||| |||| ||||| ||||| || || |      |||||||||||||||||||  | ||||||| |||||||||||  |||| | |||||||    
T  18326610 caaataaaagctatcaaataaaataatcacacaata-----caacagaaattcaaataaatcctcgaagaggaacttactttcatcgacacagaaccaag 18326516  T
Q  198 ctttcaacataatca---ttgatatagatccacgagctttccccattggtaattctagttttctctatgctaccatctctcaaattatagaca 287  Q
    |||||| |||||| |   ||| |||||  |||  | | ||  |||||| |||||||| || ||||||  ||| ||||||||||||||||||||    
T  18326515 ctttcagcataataattcttgttatagcgccagcaacgtttaccattgataattctaattctctctacactatcatctctcaaattatagaca 18326423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 133 - 283
Target Start/End: Complemental strand, 22011189 - 22011030
Alignment:
Q  133 acaagaattaacagaaattcaaataaatttgaagagggacttactttcaatgacagaaaaccaagctttcaacataatcattgatatagat------cca 226  Q
    ||||||||||||||||||| |||||||||| |||||| ||||||||||||||||| ||||| ||||||||||||||||  |||||||||||      |||    
T  22011189 acaagaattaacagaaattaaaataaatttaaagaggaacttactttcaatgacacaaaactaagctttcaacataattcttgatatagatccccgacca 22011090  T
Q  227 cgagcttt---ccccattggtaattctagttttctctatgctaccatctctcaaattata 283  Q
    ||||| ||   | |||||||||||||||||||||||||  ||||||||||||| ||||||    
T  22011089 cgagcatttaccaccattggtaattctagttttctctacactaccatctctcagattata 22011030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 20 - 203
Target Start/End: Complemental strand, 18322833 - 18322643
Alignment:
Q  20 gtgaattaccttaaatataaaagcaa-aagaaattcattcaatggcgagattgtcaaactgtttccattagccaaaataattaaataaaagccatcatat 118  Q
    |||||||||||| ||||||||||||| |||||| |||||  || | || |||||||||| |||  || ||||||||||||| |||||||| |||||||||    
T  18322833 gtgaattaccttgaatataaaagcaataagaaaatcatttgattgagaaattgtcaaacagttaacaatagccaaaataataaaataaaatccatcatat 18322734  T
Q  119 aaattaatcccagaac----aagaattaacagaaattcaaataaat--ttgaagagggacttactttcaatgacagaaaaccaagctttca 203  Q
    ||  |||||  | |||    |||||||||||||||||||| || ||  | ||||||| ||||||||||||||||| |||||||||||||||    
T  18322733 aacataatcaaacaacatataagaattaacagaaattcaagtatatcatcgaagaggaacttactttcaatgacacaaaaccaagctttca 18322643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 133 - 287
Target Start/End: Original strand, 16839111 - 16839267
Alignment:
Q  133 acaagaattaacagaaattcaaataaat--ttgaagagggacttactttcaatgacagaaaaccaagctttcaacataatcattgatatagatccacgag 230  Q
    |||||||||||| |||||||||||||||  | ||||||| ||||||||||| | ||| |||||||||||||||  ||| |  |||||||||  |||| ||    
T  16839111 acaagaattaacggaaattcaaataaatcgtggaagaggaacttactttcattcacataaaaccaagctttcagaatagttcttgatatagtgccaccag 16839210  T
Q  231 ctttccccattggtaattctagttttctctatgctaccatctctcaaattatagaca 287  Q
    | ||| |||||| ||||||||||| ||| ||  |||  |||| ||||||||||||||    
T  16839211 cgttcaccattgataattctagttctctttacactatgatctatcaaattatagaca 16839267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 133 - 287
Target Start/End: Original strand, 16846194 - 16846350
Alignment:
Q  133 acaagaattaacagaaattcaaataaatt--tgaagagggacttactttcaatgacagaaaaccaagctttcaacataatcattgatatagatccacgag 230  Q
    |||||||||||| | |||||||| ||||   |||||||| ||||||||||||||| | |||||||||||||||  ||| |  |||||||||  |||| ||    
T  16846194 acaagaattaacggcaattcaaagaaatcaatgaagaggaacttactttcaatgaaacaaaaccaagctttcagaatagttcttgatatagtgccaccag 16846293  T
Q  231 ctttccccattggtaattctagttttctctatgctaccatctctcaaattatagaca 287  Q
    | ||| |||||| ||||||||||| ||| ||  |||  |||| ||||||||||||||    
T  16846294 cgttcaccattgataattctagttctctttacactatgatctatcaaattatagaca 16846350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 35 - 99
Target Start/End: Complemental strand, 22023155 - 22023091
Alignment:
Q  35 tataaaagcaaaagaaattcattcaatggcgagattgtcaaactgtttccattagccaaaataat 99  Q
    ||||||||||||||||||||||||||||   |||||||||||| ||| ||| |||||||||||||    
T  22023155 tataaaagcaaaagaaattcattcaatgcaaagattgtcaaaccgttaccaatagccaaaataat 22023091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 386 - 440
Target Start/End: Complemental strand, 22028704 - 22028650
Alignment:
Q  386 aatttgaagattaatcttgagtaattgagtccaagaatcttcaactccataatcc 440  Q
    |||||||| | ||||||| ||||||||||||||||| ||||||||||||||||||    
T  22028704 aatttgaaaactaatcttaagtaattgagtccaagactcttcaactccataatcc 22028650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 22025011 - 22024957
Alignment:
Q  22 gaattaccttaaatataaaagcaaaagaaattcattcaatggcgagattgtcaaa 76  Q
    ||||||||||| || ||||||||||||||||||||||||||  ||||||| ||||    
T  22025011 gaattaccttatatgtaaaagcaaaagaaattcattcaatgcagagattggcaaa 22024957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 135 - 210
Target Start/End: Complemental strand, 22028954 - 22028877
Alignment:
Q  135 aagaattaacagaaattcaaataaatttg--aagagggacttactttcaatgacagaaaaccaagctttcaacataat 210  Q
    |||||| |||||||||||||||||||     |||||| ||||||||||||||||| ||||| | ||||||||||||||    
T  22028954 aagaataaacagaaattcaaataaatcgacaaagaggaacttactttcaatgacacaaaactaggctttcaacataat 22028877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 171 - 287
Target Start/End: Complemental strand, 22019654 - 22019535
Alignment:
Q  171 acttactttcaatgacagaaaaccaagctttcaacataatcattgatatagatccacgagctttccccattggtaattctagttttctcta---tgctac 267  Q
    |||||||||| |||||| ||||| ||||||||||||||||  |||||||||| ||   ||| ||  || |||||||||||| || ||||||   | ||||    
T  22019654 acttactttctatgacacaaaactaagctttcaacataattcttgatatagagcctatagcattagccgttggtaattctaattctctctacattactac 22019555  T
Q  268 catctctcaaattatagaca 287  Q
    ||||| ||||||||| ||||    
T  22019554 catctttcaaattattgaca 22019535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 438
Target Start/End: Complemental strand, 18326297 - 18326245
Alignment:
Q  386 aatttgaagattaatcttgagtaattgagtccaagaatcttcaactccataat 438  Q
    |||||||||||| ||||| ||||||||| ||||||| ||||||||||| ||||    
T  18326297 aatttgaagatttatcttaagtaattgactccaagactcttcaactccgtaat 18326245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 354
Target Start/End: Original strand, 16839301 - 16839334
Alignment:
Q  321 agtgtatcataatttttagaaaggtgcaatggca 354  Q
    |||| |||||||||||||||||||||||||||||    
T  16839301 agtgcatcataatttttagaaaggtgcaatggca 16839334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 354
Target Start/End: Original strand, 16846384 - 16846417
Alignment:
Q  321 agtgtatcataatttttagaaaggtgcaatggca 354  Q
    |||| |||||||||||||||||||||||||||||    
T  16846384 agtgcatcataatttttagaaaggtgcaatggca 16846417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 352
Target Start/End: Complemental strand, 22028779 - 22028735
Alignment:
Q  308 gcttcccagtatcagtgtatcataatttttagaaaggtgcaatgg 352  Q
    |||| ||| |||||||||||| | |||||||||||||||||||||    
T  22028779 gctttccaatatcagtgtatcgtgatttttagaaaggtgcaatgg 22028735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 133 - 287
Target Start/End: Complemental strand, 3866227 - 3866064
Alignment:
Q  133 acaagaattaacagaaattcaaataaat--ttgaagagggacttactttcaatgacagaaaaccaagctttcaacataatcattgatatagatccacgag 230  Q
    ||||||||||||  ||||||||||||||  | ||||||| ||||||||||||||||| | |||||||||||||  ||| | ||||||||||  |||| ||    
T  3866227 acaagaattaacgaaaattcaaataaatcgtcgaagaggaacttactttcaatgacacagaaccaagctttcagaatagttattgatatagtgccaccag 3866128  T
Q  231 cttt--cc-----ccattggtaattctagttttctctatgctaccatctctcaaattatagaca 287  Q
    | ||  ||     |||||| ||||||||||| ||||||  ||| ||||||||||| ||||||||    
T  3866127 cgttaaccattgaccattgataattctagttctctctacactatcatctctcaaaatatagaca 3866064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 210
Target Start/End: Original strand, 10205208 - 10205247
Alignment:
Q  171 acttactttcaatgacagaaaaccaagctttcaacataat 210  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  10205208 acttactttcaatgacccaaaaccaagctttcaacataat 10205247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 436
Target Start/End: Original strand, 10205439 - 10205488
Alignment:
Q  387 atttgaagattaatcttgagtaattgagtccaagaatcttcaactccata 436  Q
    ||||||||||||||||| | || |||||||||||| |||||||| |||||    
T  10205439 atttgaagattaatcttaactagttgagtccaagactcttcaacaccata 10205488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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