View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6523_low_5 (Length: 457)
Name: NF6523_low_5
Description: NF6523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6523_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 13 - 446
Target Start/End: Original strand, 28224618 - 28225053
Alignment:
| Q |
13 |
aaaatagccaaaatatttaacataattaatactgtacactcacggcagaaaaacatactcaatgacataaacatattttcattattagattcagaataaa |
112 |
Q |
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| T |
28224618 |
aaaatagccaaaatatttaacataattaatactgtacactcacggcagaaaaacatactcaatgacataaacatattttcattattagattcagaataaa |
28224717 |
T |
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| Q |
113 |
taagagagattagaaaccattcaatttcaaatcaatgacaagtgtctaaatagttaacgaaaactttcaaataacctggacacagactgataataggata |
212 |
Q |
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| T |
28224718 |
taagagagattagaaaccattcaatttcaaatcaatgagaagtgtccaaatagttaacgaaaactttcaaataacctggacatagactgataataggata |
28224817 |
T |
|
| Q |
213 |
tctcttcatctaaaagcattttcatttttcataaaggaaacataccaagaagcnnnnnnnnnnntacttgttttaattcaatgcaaaagtagctatggca |
312 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
28224818 |
tcttttcatctaaaagcattttcatttttcataaaggaaacataccaagaagcaaaaaaaaaaatacttgttttaattcaatgcaaaagtagatatggca |
28224917 |
T |
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| Q |
313 |
aagtcttgtgatttgcaaatcaaaattaatggtcaacagatattccttttgaaagaggtatgcattagtcttcttcattgattctttgtggtata--ata |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
28224918 |
aagtcttgtgatttgcaaatcaaaattaatggtcaacagatattccttttgaaagaggtatgcattagtcttcttcattgattctttgtagtataatata |
28225017 |
T |
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| Q |
411 |
tagttattatgtacatgatcttatgtgtgagttgat |
446 |
Q |
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| T |
28225018 |
tagttattatgtacatgatcttatgtgtgagttgat |
28225053 |
T |
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