View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6523_low_6 (Length: 436)
Name: NF6523_low_6
Description: NF6523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6523_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 14 - 427
Target Start/End: Complemental strand, 36268116 - 36267701
Alignment:
| Q |
14 |
agatcacggtcacaaacctttatttaaattctggttgatagataagctatctttcatcacattatttttatagctacgtgtgtgtgaacacccaattttt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36268116 |
agatcacggtcacaaacctttatttaaattctggttgatagataagctatctttcatcacattatttttatagctacgtgtgtgtgaacacccaattttt |
36268017 |
T |
|
| Q |
114 |
tattttattccctattgaatgaaat-gtgttcacaatgtgcaataattgacatgatttctttggatattataaagtaatatgaaaaggtcaaaataagta |
212 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36268016 |
tattttattccctattgaatgaaattgtgttcacaatgtgcaataattgacatgatttctttggatattataaagtaatatgaaaaggtcaaaataagta |
36267917 |
T |
|
| Q |
213 |
agaagaagaaattaatttttcaagcaaagtaggctgtagatcatgaactaattagagtctaatttcctaacaagttctgcc-nnnnnnnnnnnnnnnntc |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |
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| T |
36267916 |
agaagaagaaattaatttttcaagcaaagtaggctgtagatcatgaactaatttgagtctaatttcctaacaagttctgccaaaaaaaaagtaaaaaatc |
36267817 |
T |
|
| Q |
312 |
aacgtgatagttgaaaaaatggtgagtttggtgcacctgtttcaagggaaatcttttggtgctggcaaaagcaatggtaactgcaggattgaaatgagca |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36267816 |
aacgtgatagttgaaaaaatggtgagtttggtgcacctgtttcaagggaaatcttttggtgctggcaaaagcaatggtaactgcaggattgaaatgagca |
36267717 |
T |
|
| Q |
412 |
ccagagatgtgaccaa |
427 |
Q |
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| T |
36267716 |
ccagagatgtgaccaa |
36267701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 427
Target Start/End: Complemental strand, 36262591 - 36262540
Alignment:
| Q |
376 |
gcaaaagcaatggtaactgcaggattgaaatgagcaccagagatgtgaccaa |
427 |
Q |
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||||||||||| ||||| |||||||||||||||||||||||||| ||||||| |
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|
| T |
36262591 |
gcaaaagcaatagtaacagcaggattgaaatgagcaccagagatatgaccaa |
36262540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 427
Target Start/End: Complemental strand, 5415301 - 5415250
Alignment:
| Q |
376 |
gcaaaagcaatggtaactgcaggattgaaatgagcaccagagatgtgaccaa |
427 |
Q |
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||||||||||||||||| ||||| ||||||||||||||||| |||||||||| |
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| T |
5415301 |
gcaaaagcaatggtaacagcagggttgaaatgagcaccagaaatgtgaccaa |
5415250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 427
Target Start/End: Complemental strand, 5388752 - 5388706
Alignment:
| Q |
381 |
agcaatggtaactgcaggattgaaatgagcaccagagatgtgaccaa |
427 |
Q |
| |
|
||||||||| || ||||| |||||||||||||||||||||||||||| |
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|
| T |
5388752 |
agcaatggtgacagcagggttgaaatgagcaccagagatgtgaccaa |
5388706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 427
Target Start/End: Complemental strand, 5402561 - 5402515
Alignment:
| Q |
381 |
agcaatggtaactgcaggattgaaatgagcaccagagatgtgaccaa |
427 |
Q |
| |
|
||||||||| || ||||| |||||||||||||||||||||||||||| |
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|
| T |
5402561 |
agcaatggtgacagcagggttgaaatgagcaccagagatgtgaccaa |
5402515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 425
Target Start/End: Complemental strand, 5396861 - 5396817
Alignment:
| Q |
381 |
agcaatggtaactgcaggattgaaatgagcaccagagatgtgacc |
425 |
Q |
| |
|
||||||||| || || ||||||||||||||||||||||| ||||| |
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|
| T |
5396861 |
agcaatggtgacagcgggattgaaatgagcaccagagatatgacc |
5396817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 391 - 427
Target Start/End: Complemental strand, 33127834 - 33127798
Alignment:
| Q |
391 |
actgcaggattgaaatgagcaccagagatgtgaccaa |
427 |
Q |
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||||||||||||||||| ||||||||||||||||||| |
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| T |
33127834 |
actgcaggattgaaatgggcaccagagatgtgaccaa |
33127798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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