View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6523_low_8 (Length: 410)
Name: NF6523_low_8
Description: NF6523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6523_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 17 - 401
Target Start/End: Complemental strand, 5414661 - 5414277
Alignment:
| Q |
17 |
agtttatactacaaagtgatgcaaaggtttttgttccttcttatcccaagtcattgatgcagttaatgggagagtcttctattttgctcatcaatggaac |
116 |
Q |
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| T |
5414661 |
agtttatactacaaagtgatgcaaaggtttttgttccttcttatcccaagtcattgatgcagttaatgggagagtcttctattttgctcatcaatggaac |
5414562 |
T |
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| Q |
117 |
cttgcaaaggagaatacatggacttattggtgctttcttcaagtctcaacagttaaaggttcagattacctcagatatgcagaagtatgtacaagaatca |
216 |
Q |
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| T |
5414561 |
cttgcaaaggagaatacatggacttattggtgctttcttcaagtctcaacagttaaaggttcagattacctcagatatgcagaagtatgtacaagaatca |
5414462 |
T |
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| Q |
217 |
atggcaaattggaaagaggaccaacctatatacatacaagatgaaacaaaaaaggttacctctctttccttccccctcagtttctgagtgtgtgtgagtt |
316 |
Q |
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| T |
5414461 |
atggcaaattggaaagaggaccaacctatatacatacaagatgaaacaaaaaaggttacctctgtttccttccccctcagtttctgagtgtgtgtgagtt |
5414362 |
T |
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| Q |
317 |
tgtactatctttgtttgcttctctctcccacgtgtgttggtgtcagaatctatctccaaagtttgaactctaatattttaccttc |
401 |
Q |
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| T |
5414361 |
tgtactatctttgtttgcttctctctcccacgtgtgttggtgtcagaatctatctccaaagtttgaactctaatattttaccttc |
5414277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 247 - 401
Target Start/End: Complemental strand, 14087728 - 14087574
Alignment:
| Q |
247 |
tacatacaagatgaaacaaaaaaggttacctctctttccttcccc-ctcagtttctgagtgtgtgt--gag-tttgt-actatctttgtttgcttctctc |
341 |
Q |
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| T |
14087728 |
tacatacaagatgaaacaaaaaaggctacctctttttccttcccctctcggtctct-actctctataggagttttgtgcctatctttgtctccttctctc |
14087630 |
T |
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| Q |
342 |
tcccacgtgtgttggtgtcagaatctatctccaaagtttgaactctaatattttaccttc |
401 |
Q |
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| T |
14087629 |
tcccacgtgtgtttgtgtcataatcta----caaagtttgaattctaatattttaccttc |
14087574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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