View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6523_low_9 (Length: 409)

Name: NF6523_low_9
Description: NF6523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6523_low_9
NF6523_low_9
[»] chr4 (9 HSPs)
chr4 (12-395)||(9603151-9603534)
chr4 (12-393)||(9594350-9594731)
chr4 (12-387)||(9582563-9582935)
chr4 (12-387)||(9588258-9588630)
chr4 (12-393)||(9568308-9568689)
chr4 (18-387)||(9573461-9573816)
chr4 (12-96)||(54295949-54296033)
chr4 (218-390)||(54295670-54295839)
chr4 (18-72)||(37894946-37895000)
[»] chr6 (18 HSPs)
chr6 (12-102)||(29123230-29123320)
chr6 (12-102)||(32745744-32745834)
chr6 (12-107)||(32973513-32973608)
chr6 (12-98)||(29144370-29144456)
chr6 (12-102)||(29149753-29149843)
chr6 (12-102)||(34279400-34279490)
chr6 (12-96)||(29130403-29130487)
chr6 (12-102)||(29152965-29153055)
chr6 (12-98)||(34259145-34259231)
chr6 (12-98)||(21379332-21379418)
chr6 (12-96)||(29299153-29299237)
chr6 (299-346)||(29144657-29144704)
chr6 (41-98)||(29136409-29136466)
chr6 (12-69)||(34281049-34281106)
chr6 (302-346)||(29012262-29012306)
chr6 (300-348)||(29130682-29130730)
chr6 (26-97)||(23216862-23216933)
chr6 (304-342)||(34279157-34279195)
[»] chr7 (2 HSPs)
chr7 (23-107)||(42445421-42445505)
chr7 (299-390)||(42445694-42445785)
[»] scaffold0134 (2 HSPs)
scaffold0134 (26-97)||(17144-17215)
scaffold0134 (221-281)||(16957-17017)
[»] chr8 (1 HSPs)
chr8 (10-139)||(31135828-31135957)
[»] chr5 (4 HSPs)
chr5 (12-102)||(40548367-40548457)
chr5 (12-92)||(31788624-31788704)
chr5 (12-92)||(37512004-37512084)
chr5 (12-92)||(40544234-40544314)
[»] scaffold0054 (2 HSPs)
scaffold0054 (14-107)||(34343-34436)
scaffold0054 (14-107)||(40700-40793)
[»] chr2 (2 HSPs)
chr2 (26-90)||(7524980-7525044)
chr2 (24-71)||(7436173-7436220)
[»] scaffold0129 (1 HSPs)
scaffold0129 (10-67)||(9562-9619)


Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 12 - 395
Target Start/End: Complemental strand, 9603534 - 9603151
Alignment:
Q  12 atgatattgccttctccattctatccaaattgcctcttaaaccttttaagcgatttgaatgcgtttgtaaaccatggtctctcttatctgataaccgtag 111  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  9603534 atgatattgccttctccattctatccaaattgcctcttaaatcttttaagcgatttgaatgcttttgtaaaccatggtctctcttatctgagaaccgtag 9603435  T
Q  112 ttttatgaacacattctgcaacaatctcttgtttaattctcatcgatgtccttattacgacgggacatctctcctcctaagggatttcaaacttggtcaa 211  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9603434 ttttatgaacacattctgcaacaatctcttatttaattctcatcgatgtccttattacgacgggacatctctcctcctaagggatttcaaacttggtcaa 9603335  T
Q  212 gacgtcttctattctatttctggtgaaaggtttgagaacaaagttaaaatagatttcccaaattcatatgatgcgaaccgttttaaatttcgtatttttg 311  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  9603334 gacgttttctattctatttctggtgaaaggtttgagaacaaagttaaaatagatttcccaaattcatatgatgcaaaccgttttaaatttcgtatttttg 9603235  T
Q  312 gttttggtagtattaatgggacattttgtctctatcaagcttattattattgcaatactgtattgtggaacccatctacacagg 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9603234 gttttggtagtattaatgggacattttgtctctatcaagcttattattattgcaatactgtattgtggaacccatctacacagg 9603151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 12 - 393
Target Start/End: Complemental strand, 9594731 - 9594350
Alignment:
Q  12 atgatattgccttctccattctatccaaattgcctcttaaaccttttaagcgatttgaatgcgtttgtaaaccatggtctctcttatctgataaccgtag 111  Q
    |||||||| |||||||||||||||| ||||| ||| ||||| ||||||||||||||||||| ||| | ||| ||||||||||||||| ||| |||  |      
T  9594731 atgatatttccttctccattctatctaaattacctattaaatcttttaagcgatttgaatgtgttcgcaaagcatggtctctcttatgtgaaaacgatca 9594632  T
Q  112 ttttatgaacacattctgcaacaatctcttgtttaattctcatcgatgtccttattacgacgggacatctctcctcctaagggatttcaaacttggtcaa 211  Q
     || |||||||  ||| ||||||||||||| | ||||||||| |||||||||||||||||||||  |||||| || |||| ||||||| |||||||| ||    
T  9594631 cttcatgaacatgttccgcaacaatctcttatctaattctcaccgatgtccttattacgacgggggatctctgcttctaaaggatttcgaacttggtaaa 9594532  T
Q  212 gacgtcttctattctatttctggtgaaaggtttgagaacaaagttaaaatagatttcccaaattcatatgatgcgaaccgttt---taaatttcgtattt 308  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||| |||   |||| ||||||||    |||||||||||||    
T  9594531 gacgttttctattctatttctggtgaaaggtttgagaacaatgttaaattagatttctcaaatccat---atgcaaaccgtttcaaaaaatttcgtattt 9594435  T
Q  309 ttggttttggtagtattaatgggacattttgtctctatcaagcttattattattgcaatactgtattgtggaacccatctacaca 393  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| | || ||||||||||||||||||||||||||    
T  9594434 ttggttttggtagtattaatgggacattttgtctctatcaagattattattatggaaacactgtattgtggaacccatctacaca 9594350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 12 - 387
Target Start/End: Complemental strand, 9582935 - 9582563
Alignment:
Q  12 atgatattgccttctccattctatccaaattgcctcttaaaccttttaagcgatttgaatgcgtttgtaaaccatggtctctcttatctgataaccgtag 111  Q
    |||| ||||||||||| ||| |||||||||||||| ||||| |  |||| || ||||||||| || | ||| ||||||||||||||||||| |||| |      
T  9582935 atgaaattgccttctctattttatccaaattgccttttaaatccattaaacggtttgaatgcattcgcaaagcatggtctctcttatctgaaaaccctca 9582836  T
Q  112 ttttatgaacacattctgcaacaatctcttgtttaattctcatcgatgtccttattacgacgggacatctctcctcctaagggatttcaaacttggtcaa 211  Q
     || |||||||  |||| ||| ||||| || | ||||||||| | ||||||||||||||| |||  |||||| ||||||||||||||| |||||||| ||    
T  9582835 cttcatgaacatgttctacaagaatcttttatctaattctcaccaatgtccttattacgatgggggatctctgctcctaagggatttcgaacttggtaaa 9582736  T
Q  212 gacgtcttctattctatttctggtgaaaggtttgagaacaaagttaaaatagatttcccaaattcatatgatgcgaaccgttttaaatttcgtatttttg 311  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| ||||||  |   ||||||| ||||||||||||||||    
T  9582735 gacgttttctattctatttctggtgaaaggtttgagaacaaagttcaattagatttctcaaatgcatatgcag---accgtttcaaatttcgtatttttg 9582639  T
Q  312 gttttggtagtattaatgggacattttgtctctatcaagcttattattattgcaatactgtattgtggaacccatc 387  Q
    | ||||||||||||||||| ||||||||||||||||||| |||||||||| |||| ||| ||||||||||||||||    
T  9582638 gctttggtagtattaatggcacattttgtctctatcaagattattattatggcaaaactctattgtggaacccatc 9582563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 12 - 387
Target Start/End: Complemental strand, 9588630 - 9588258
Alignment:
Q  12 atgatattgccttctccattctatccaaattgcctcttaaaccttttaagcgatttgaatgcgtttgtaaaccatggtctctcttatctgataaccgtag 111  Q
    |||| ||||||||||| ||| |||||||||||||| ||||| |  |||| || ||||||||| || | ||| ||||||||||||||||||| |||| |      
T  9588630 atgaaattgccttctctattttatccaaattgccttttaaatccattaaacggtttgaatgcattcgcaaagcatggtctctcttatctgaaaaccctca 9588531  T
Q  112 ttttatgaacacattctgcaacaatctcttgtttaattctcatcgatgtccttattacgacgggacatctctcctcctaagggatttcaaacttggtcaa 211  Q
     || |||||||  |||| ||| ||||| || | ||||||||| | ||||||||||||||| |||  |||||| ||||||||||||||| |||||||| ||    
T  9588530 cttcatgaacatgttctacaagaatcttttatctaattctcaccaatgtccttattacgatgggggatctctgctcctaagggatttcgaacttggtaaa 9588431  T
Q  212 gacgtcttctattctatttctggtgaaaggtttgagaacaaagttaaaatagatttcccaaattcatatgatgcgaaccgttttaaatttcgtatttttg 311  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| ||||||  |   ||||||| ||||||||||||||||    
T  9588430 gacgttttctattctatttctggtgaaaggtttgagaacaaagttcaattagatttctcaaatgcatatgcag---accgtttcaaatttcgtatttttg 9588334  T
Q  312 gttttggtagtattaatgggacattttgtctctatcaagcttattattattgcaatactgtattgtggaacccatc 387  Q
    | ||||||||||||||||| ||||||||||||||||||| |||||||||| |||| ||| ||||||||||||||||    
T  9588333 gctttggtagtattaatggcacattttgtctctatcaagattattattatggcaaaactctattgtggaacccatc 9588258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 12 - 393
Target Start/End: Original strand, 9568308 - 9568689
Alignment:
Q  12 atgatattgccttctccattctatccaaattgcctcttaaaccttttaagcgatttgaatgcgtttgtaaaccatggtctct---cttatctgataaccg 108  Q
    |||||||||||||||| |||||||||||||||||| ||||| || |||||||||||||||||||| ||||| ||||||||||   ||||||||| ||||     
T  9568308 atgatattgccttctctattctatccaaattgccttttaaatctattaagcgatttgaatgcgttcgtaaatcatggtctctgatcttatctgaaaaccc 9568407  T
Q  109 tagttttatgaacacattctgcaacaatctcttgtttaattctcatcgatgtccttattacgacgggacatctctcctcctaagggatttcaaacttggt 208  Q
    |   || |||||||  |||| ||| ||||| || | |||||||||  ||| |||||||||||| ||  ||||||| || |||| ||||||  ||||||||    
T  9568408 tcacttcatgaacatgttctacaagaatcttttatctaattctcacagatatccttattacgatggagcatctcttcttctaaaggatttagaacttggt 9568507  T
Q  209 caagacgtcttctattctatttctggtgaaaggtttgagaacaaagttaaaatagatttcccaaattcatatgatgcgaaccgttttaaatttcgtattt 308  Q
     |||| || ||||||||||||| ||||||||||||||||||||||||  || |||||||| ||||| ||| ||   | |||||||| || ||||||||||    
T  9568508 aaagaagttttctattctatttatggtgaaaggtttgagaacaaagtacaattagatttcacaaatccatttg---caaaccgtttcaattttcgtattt 9568604  T
Q  309 ttggttttggtagtattaatgggacattttgtctctatcaagcttattattattgcaatactgtattgtggaacccatctacaca 393  Q
    |||||||||||||||||||||| ||| |||||||| |||||| | ||||| || |||| ||| ||||||||||||||||||||||    
T  9568605 ttggttttggtagtattaatggcacactttgtctccatcaagatgattataatggcaaaactctattgtggaacccatctacaca 9568689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 18 - 387
Target Start/End: Original strand, 9573461 - 9573816
Alignment:
Q  18 ttgccttctccattctatccaaattgcctcttaaaccttttaagcgatttgaatgcgtttgtaaaccatggtctctcttatctgataaccgtagttttat 117  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||| | ||| |||||||||| |||  ||| |||| |   ||||     
T  9573461 ttgccttctccattctatccaaattgcctattaaatcttttaagcgatttgaatgtgttcgcaaatcatggtctctgttaattgaaaaccatcactttaa 9573560  T
Q  118 gaacacattctgcaacaatctcttgtttaattctcatcgatgtcctta-ttacgacgggacatctctcctcctaagggatttcaaacttggtcaagacgt 216  Q
    |||||  || ||||||||||||||             ||||||||||| |||||| ||| ||||| | ||||||| ||||||  |||||||| |||||||    
T  9573561 gaacatgttttgcaacaatctctta------------cgatgtccttaattacgatggggcatctttgctcctaaaggattttgaacttggtaaagacgt 9573648  T
Q  217 cttctattctatttctggtgaaaggtttgagaacaaagttaaaatagatttcccaaattcatatgatgcgaaccgttttaaatttcgtatttttggtttt 316  Q
     ||||||||||||| ||||||||||||||||| |||| | ||  |||||||| ||||| || |||   | |||||||| || ||||||||||||||||||    
T  9573649 tttctattctatttatggtgaaaggtttgagatcaaattaaagttagatttctcaaatccacatg---caaaccgtttcaagtttcgtatttttggtttt 9573745  T
Q  317 ggtagtattaatgggacattttgtctctatcaagcttattattattgcaatactgtattgtggaacccatc 387  Q
    |||||||||||||| |||||||||||| |||||| |  ||||||| |||| ||| ||| ||||||||||||    
T  9573746 ggtagtattaatggcacattttgtctccatcaaggtggttattatggcaaaactctatcgtggaacccatc 9573816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 12 - 96
Target Start/End: Complemental strand, 54296033 - 54295949
Alignment:
Q  12 atgatattgccttctccattctatccaaattgcctcttaaaccttttaagcgatttgaatgcgtttgtaaaccatggtctctctt 96  Q
    |||||||| ||||||||||| |||| ||| ||||||||||| ||||||| ||||||||||||||| ||| | |||||||||||||    
T  54296033 atgatatttccttctccattttatcaaaactgcctcttaaatcttttaaacgatttgaatgcgttcgtagatcatggtctctctt 54295949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 218 - 390
Target Start/End: Complemental strand, 54295839 - 54295670
Alignment:
Q  218 ttctattctatttctggtgaaaggtttgagaacaaagttaaaatagatttcccaaattcatatgatgcgaaccgttttaaatttcgtatttttggttttg 317  Q
    |||||||| |||| ||||||||||||| | || ||||||||| |||||||||||||| ||| ||   | |||| || | | |||  |||| |||||||||    
T  54295839 ttctattccatttttggtgaaaggtttcaaaataaagttaaattagatttcccaaatccatttg---caaaccattgtgattttgttattcttggttttg 54295743  T
Q  318 gtagtattaatgggacattttgtctctatcaagcttattattattgcaatactgtattgtggaacccatctac 390  Q
    ||||| ||||||| | | |||||||| || | | | |||||||| |||| |||||||||||||| ||||||||    
T  54295742 gtagtgttaatggcataatttgtctccatgaggatgattattatggcaaaactgtattgtggaatccatctac 54295670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 37894946 - 37895000
Alignment:
Q  18 ttgccttctccattctatccaaattgcctcttaaaccttttaagcgatttgaatg 72  Q
    ||||||||||||||||||||||| | ||||| ||| |||| ||||||||||||||    
T  37894946 ttgccttctccattctatccaaactccctctcaaatctttgaagcgatttgaatg 37895000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 102
Target Start/End: Original strand, 29123230 - 29123320
Alignment:
Q  12 atgatattgccttctccattctatccaaattgcctcttaaaccttttaagcgatttgaatgcgtttgtaaaccatggtctctcttatctga 102  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||| ||| |||||| |||| | ||| ||||||||||||| |||||    
T  29123230 atgatattgccttctccattctatcaaaattgcctcttaaatcttttaaacgagttgaatccgttcgcaaatcatggtctctcttgtctga 29123320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 102
Target Start/End: Complemental strand, 32745834 - 32745744
Alignment:
Q  12 atgatattgccttctccattctatccaaattgcctcttaaaccttttaagcgatttgaatgcgtttgtaaaccatggtctctcttatctga 102  Q
    ||||||||||||||||||| ||||| ||| | ||||||||| ||||||| ||||||||||||||| | ||| |||||||||||||||||||    
T  32745834 atgatattgccttctccatcctatcaaaactacctcttaaatcttttaaacgatttgaatgcgttcgcaaatcatggtctctcttatctga 32745744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 32973608 - 32973513
Alignment:
Q  12 atgatattgccttctccattctatccaaattgcctcttaaaccttttaagcgatttgaatgcgtttgtaaaccatggtctctcttatctgataacc 107  Q
    |||| ||| ||||||  |||||||| ||||||||||||||| |||| ||||| |||||||| ||||||||| ||||||||||||||||||| ||||    
T  32973608 atgaaatttccttctatattctatcaaaattgcctcttaaatctttcaagcgttttgaatgtgtttgtaaatcatggtctctcttatctgaaaacc 32973513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 98
Target Start/End: Original strand, 29144370 - 29144456
Alignment:
Q  12 atgatattgccttctccattctatccaaattgcctcttaaaccttttaagcgatttgaatgcgtttgtaaaccatggtctctcttat 98  Q
    ||||||||||||| ||||||||||| ||||||||||||||| |||| |||||||||| ||||||| ||||| | |||| ||||||||    
T  29144370 atgatattgccttatccattctatcgaaattgcctcttaaatctttgaagcgatttggatgcgttcgtaaatcttggtatctcttat 29144456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 102
Target Start/End: Complemental strand, 29149843 - 29149753
Alignment:
Q  12 atgatattgccttctccattctatccaaattgcctcttaaaccttttaagcgatttgaatgcgtttgtaaaccatggtctctcttatctga 102  Q
    ||||||| |||||||||||||| || ||||||||||||||| |||||||  |||||||||||||| | ||| ||||||||||||| |||||    
T  29149843 atgatatagccttctccattctctcaaaattgcctcttaaatcttttaactgatttgaatgcgttcgcaaatcatggtctctcttgtctga 29149753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 102
Target Start/End: Complemental strand, 34279490 - 34279400
Alignment:
Q  12 atgatattgccttctccattctatccaaattgcctcttaaaccttttaagcgatttgaatgcgtttgtaaaccatggtctctcttatctga 102  Q
    |||||||||||||||||||||| || ||||| ||||||||| |||| ||| | |||||||| ||||||||| |||||| ||| ||||||||    
T  34279490 atgatattgccttctccattctttcaaaattacctcttaaatctttcaagagttttgaatgtgtttgtaaatcatggtatcttttatctga 34279400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 29130403 - 29130487
Alignment:
Q  12 atgatattgccttctccattctatccaaattgcctcttaaaccttttaagcgatttgaatgcgtttgtaaaccatggtctctctt 96  Q
    ||||||||  |||||||||||| || || |||||||||||| |||| ||||||||||||| |||| ||||| |||||||||||||    
T  29130403 atgatattcacttctccattctctcaaagttgcctcttaaatctttcaagcgatttgaatccgttcgtaaatcatggtctctctt 29130487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 102
Target Start/End: Complemental strand, 29153055 - 29152965
Alignment:
Q  12 atgatattgccttctccattctatccaaattgcctcttaaaccttttaagcgatttgaatgcgtttgtaaaccatggtctctcttatctga 102  Q
    |||||||||||||||||||||| || ||||||||||||||| |||| ||||  |||||||| ||| | ||| ||||||| ||| |||||||    
T  29153055 atgatattgccttctccattctctcaaaattgcctcttaaatctttcaagcattttgaatgtgttcgcaaatcatggtccctcctatctga 29152965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 34259231 - 34259145
Alignment:
Q  12 atgatattgccttctccattctatccaaattgcctcttaaaccttttaagcgatttgaatgcgtttgtaaaccatggtctctcttat 98  Q
    |||||||||||||||| ||||||  |||| | ||||||||  |||| |||||||||| ||||||| ||||| |||||||||||||||    
T  34259231 atgatattgccttctctattctacacaaactacctcttaagtctttaaagcgatttggatgcgttcgtaaatcatggtctctcttat 34259145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 21379418 - 21379332
Alignment:
Q  12 atgatattgccttctccattctatccaaattgcctcttaaaccttttaagcgatttgaatgcgtttgtaaaccatggtctctcttat 98  Q
    ||||||| | |||||| |||||||| || || ||||||||| |||| |||||||||| ||||||  ||||| |||||||||||||||    
T  21379418 atgatatagtcttctctattctatcgaagttacctcttaaatctttgaagcgatttggatgcgtccgtaaatcatggtctctcttat 21379332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 29299153 - 29299237
Alignment:
Q  12 atgatattgccttctccattctatccaaattgcctcttaaaccttttaagcgatttgaatgcgtttgtaaaccatggtctctctt 96  Q
    ||||||| || || |||||||| || || |||||||||||| |||||||||| |||||||| ||| | ||| |||||||||||||    
T  29299153 atgatatagctttttccattctctcaaagttgcctcttaaatcttttaagcgttttgaatgtgttcgcaaatcatggtctctctt 29299237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 346
Target Start/End: Original strand, 29144657 - 29144704
Alignment:
Q  299 tttcgtatttttggttttggtagtattaatgggacattttgtctctat 346  Q
    |||||||||||||||||||||||||||||||| | | |||||||||||    
T  29144657 tttcgtatttttggttttggtagtattaatggtatactttgtctctat 29144704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 29136409 - 29136466
Alignment:
Q  41 ttgcctcttaaaccttttaagcgatttgaatgcgtttgtaaaccatggtctctcttat 98  Q
    |||||||||||| |||| |||||  ||||||||||||| ||| |||||||||||||||    
T  29136409 ttgcctcttaaatctttcaagcgtattgaatgcgtttgcaaatcatggtctctcttat 29136466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 34281049 - 34281106
Alignment:
Q  12 atgatattgccttctccattctatccaaattgcctcttaaaccttttaagcgatttga 69  Q
    |||||||||||||||| ||||| || ||||||||||||||| |||| ||||| |||||    
T  34281049 atgatattgccttctctattctctcaaaattgcctcttaaatctttcaagcgttttga 34281106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 346
Target Start/End: Original strand, 29012262 - 29012306
Alignment:
Q  302 cgtatttttggttttggtagtattaatgggacattttgtctctat 346  Q
    |||||||||||||||||||||||||| || ||| |||||||||||    
T  29012262 cgtatttttggttttggtagtattaacggcacactttgtctctat 29012306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 348
Target Start/End: Original strand, 29130682 - 29130730
Alignment:
Q  300 ttcgtatttttggttttggtagtattaatgggacattttgtctctatca 348  Q
    ||||||| |||||||| |||||||||||||| |||||||||||| ||||    
T  29130682 ttcgtatctttggtttcggtagtattaatggcacattttgtctccatca 29130730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 23216933 - 23216862
Alignment:
Q  26 tccattctatccaaattgcctcttaaaccttttaagcgatttgaatgcgtttgtaaaccatggtctctctta 97  Q
    ||||||||||| || || ||||||||| |||| ||| |||||||||| ||| | ||| ||||||||||||||    
T  23216933 tccattctatcgaagttacctcttaaatctttgaagagatttgaatgtgttcgcaaatcatggtctctctta 23216862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 342
Target Start/End: Complemental strand, 34279195 - 34279157
Alignment:
Q  304 tatttttggttttggtagtattaatgggacattttgtct 342  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  34279195 tattttgggttttggtagtattaatgggacactttgtct 34279157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 107
Target Start/End: Original strand, 42445421 - 42445505
Alignment:
Q  23 ttctccattctatccaaattgcctcttaaaccttttaagcgatttgaatgcgtttgtaaaccatggtctctcttatctgataacc 107  Q
    ||||||||| |||| ||||| ||||||||| ||||||||||||||||||| ||| |||||   ||||||||||||||||| ||||    
T  42445421 ttctccattatatcaaaattacctcttaaatcttttaagcgatttgaatgtgttcgtaaattgtggtctctcttatctgaaaacc 42445505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 299 - 390
Target Start/End: Original strand, 42445694 - 42445785
Alignment:
Q  299 tttcgtatttttggttttggtagtattaatgggacattttgtctctatcaagcttattattattgcaatactgtattgtggaacccatctac 390  Q
    |||||||||||||||||||||||||||||||| ||| | |||||| || ||  | || ||||| |||| | |||||||||||| ||||||||    
T  42445694 tttcgtatttttggttttggtagtattaatggcacactctgtctccatgaatatgataattatggcaaaattgtattgtggaatccatctac 42445785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 17215 - 17144
Alignment:
Q  26 tccattctatccaaattgcctcttaaaccttttaagcgatttgaatgcgtttgtaaaccatggtctctctta 97  Q
    ||||||||||| || |||||||||||| |||| ||| |||||||||||||||| ||| ||||||||||||||    
T  17215 tccattctatcaaagttgcctcttaaatctttgaagagatttgaatgcgtttgcaaatcatggtctctctta 17144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 281
Target Start/End: Complemental strand, 17017 - 16957
Alignment:
Q  221 tattctatttctggtgaaaggtttgagaacaaagttaaaatagatttcccaaattcatatg 281  Q
    |||||| |||||||||| ||||||||||| || || ||| |||||||| ||||| ||||||    
T  17017 tattctctttctggtgagaggtttgagaataaggtcaaattagatttctcaaatccatatg 16957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 139
Target Start/End: Complemental strand, 31135957 - 31135828
Alignment:
Q  10 caatgatattgccttctccattctatccaaattgcctcttaaaccttttaagcgatttgaatgcgtttgtaaaccatggtctctcttatctgataaccgt 109  Q
    |||||||||| ||||||| ||| | ||||| |||||| | |||   || |||||||||| ||| || || |||||||||||||| |||| ||| |||| |    
T  31135957 caatgatatttccttctctattatctccaagttgcctttaaaattcttgaagcgatttgcatgtgtatgcaaaccatggtctcttttatttgaaaaccct 31135858  T
Q  110 agttttatgaacacattctgcaacaatctc 139  Q
    | |||||||||||  ||| |||||||||||    
T  31135857 atttttatgaacatgttccgcaacaatctc 31135828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 102
Target Start/End: Original strand, 40548367 - 40548457
Alignment:
Q  12 atgatattgccttctccattctatccaaattgcctcttaaaccttttaagcgatttgaatgcgtttgtaaaccatggtctctcttatctga 102  Q
    ||||||||||||| ||||||||||  ||| | ||| ||||| |||| ||||||||||||||| |  ||||| ||||||||| | |||||||    
T  40548367 atgatattgccttttccattctataaaaacttcctgttaaatctttgaagcgatttgaatgcataagtaaatcatggtctcacctatctga 40548457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 31788624 - 31788704
Alignment:
Q  12 atgatattgccttctccattctatccaaattgcctcttaaaccttttaagcgatttgaatgcgtttgtaaaccatggtctc 92  Q
    |||||||||||||||| |||||||| ||| | ||  ||||| |||| || ||||||||||||||  | ||| |||||||||    
T  31788624 atgatattgccttctctattctatcaaaactccccattaaatctttgaaacgatttgaatgcgtacgcaaatcatggtctc 31788704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 37512004 - 37512084
Alignment:
Q  12 atgatattgccttctccattctatccaaattgcctcttaaaccttttaagcgatttgaatgcgtttgtaaaccatggtctc 92  Q
    |||| ||||||||||||||| |||| ||| ||||||| ||| |||| || ||||||||||  || || ||| |||||||||    
T  37512004 atgacattgccttctccattttatcaaaactgcctctcaaatctttgaaacgatttgaatatgtatgcaaatcatggtctc 37512084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 40544234 - 40544314
Alignment:
Q  12 atgatattgccttctccattctatccaaattgcctcttaaaccttttaagcgatttgaatgcgtttgtaaaccatggtctc 92  Q
    ||||| |||||||||| |||||||| ||| | ||| ||||| |||| || ||||||||||||||  | ||| |||||||||    
T  40544234 atgatgttgccttctctattctatcaaaactccctattaaatctttgaaacgatttgaatgcgtaagaaaatcatggtctc 40544314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 34436 - 34343
Alignment:
Q  14 gatattgccttctccattctatccaaattgcctcttaaaccttttaagcgatttgaatgcgtttgtaaaccatggtctctcttatctgataacc 107  Q
    |||||| ||||| | |||||||||||| | ||||||||| |||| || ||||||  ||||||| ||||| ||||||| ||||||| ||| ||||    
T  34436 gatatttccttcacaattctatccaaactccctcttaaatctttgaaccgatttcgatgcgttcgtaaatcatggtcactcttatttgaaaacc 34343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 40793 - 40700
Alignment:
Q  14 gatattgccttctccattctatccaaattgcctcttaaaccttttaagcgatttgaatgcgtttgtaaaccatggtctctcttatctgataacc 107  Q
    |||||| ||||| | |||||||||||| | |||||| || |||| || ||||||  ||||||| ||||| ||||||| ||||||| ||| ||||    
T  40793 gatatttccttcacgattctatccaaactccctcttcaatctttgaaccgatttcgatgcgttcgtaaatcatggtcactcttatttgaaaacc 40700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 7525044 - 7524980
Alignment:
Q  26 tccattctatccaaattgcctcttaaaccttttaagcgatttgaatgcgtttgtaaaccatggtc 90  Q
    ||||||||||| ||||||||||||||| ||||  ||||||||||||  || | ||||||||||||    
T  7525044 tccattctatcaaaattgcctcttaaatctttgcagcgatttgaatctgtatctaaaccatggtc 7524980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 7436220 - 7436173
Alignment:
Q  24 tctccattctatccaaattgcctcttaaaccttttaagcgatttgaat 71  Q
    ||||||||||||| || |||||||||||| |||| |||||||||||||    
T  7436220 tctccattctatcaaatttgcctcttaaatctttgaagcgatttgaat 7436173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 9562 - 9619
Alignment:
Q  10 caatgatattgccttctccattctatccaaattgcctcttaaaccttttaagcgattt 67  Q
    |||||| ||||| || |||||||| |||||||||||||||||| |||| || ||||||    
T  9562 caatgacattgcattttccattctctccaaattgcctcttaaatctttgaaacgattt 9619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University