View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6524_high_3 (Length: 468)
Name: NF6524_high_3
Description: NF6524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6524_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 124 - 455
Target Start/End: Original strand, 45306445 - 45306772
Alignment:
| Q |
124 |
atacgtcaaatgatttttatctaactaccaaatcattttcttaattattgaggctaaatactatcttgtacttctttagattgattatcctaacggatgt |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||| ||||||||||||| |||||| |||||| |
|
|
| T |
45306445 |
atacgtcaaatgatttttatctaactaccaaatcattttctttatttttgaggctaaatactagcttgtactcctttagattgattttcctaatggatgt |
45306544 |
T |
|
| Q |
224 |
gttttgattctgtatttaactaagaacatcattaattttgttttaggtatgaaataatatgcattccttatactcttttttgtgtagtacttgaaatgtt |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || | | |||| |
|
|
| T |
45306545 |
gttttgattctgtatttaactaagaacatcattaattttgttttaggtatgaaataatatgcattccttatactctattttgtg----acaag-attgtt |
45306639 |
T |
|
| Q |
324 |
tggatatgtattcttgctaataattatccttttccaaaatccatttttcctcttaattcaccttcttgttttactt-aaatttttatgcgtaattgctaa |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
45306640 |
tggatatgtattcttgctaataattatccttttccaaaatccatttttcctcttaattcaccttcttgttttacttaaaaattttatgcgtaattgctaa |
45306739 |
T |
|
| Q |
423 |
ttttatttgttaatttgattgtgtaggatgatg |
455 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
45306740 |
ttttatttgttaatttgattatgtaggatgatg |
45306772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 45306322 - 45306365
Alignment:
| Q |
1 |
tgtggttgaggtttgattcctttgttaccactctagaacgacgg |
44 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45306322 |
tgtggttgaggtttgattcctttgttaccactctagaacgacgg |
45306365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University