View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6524_high_8 (Length: 294)
Name: NF6524_high_8
Description: NF6524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6524_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 43715229 - 43715505
Alignment:
| Q |
1 |
ttttactcatggcggcgttatacgtcgtcctcgcagcaaaacgacgtagtgaccaagaaaacgacgtggagcggaaagatagcgacggtgaaatggtccc |
100 |
Q |
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| T |
43715229 |
ttttactcatggcggcgttatacgtcgtcctcgcagcaaaacgacgtagtgaccaagaaaacgacgtggagcggaaagatagcgacggtgaaatggtccc |
43715328 |
T |
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| Q |
101 |
accttgggaagtgacactgtaccagaaactcgatctgtcaatatccgacgtggcaaaatgtatttctgctggcaatatcgtcggacacggtcgatcaggt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
43715329 |
accttgggaagtgacactgtaccagaaactcgatctgtcaatatccgacgtggcaaaatgtatctctgctggcaatatcgtcggacacggtcgatcaggt |
43715428 |
T |
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| Q |
201 |
gtcgtttataaagttaccatgccaacaggattaaccatcgcggttaaaaaattccggtcgtcggagaaattctcagc |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43715429 |
gtcgtttataaagttaccatgccaacaggattaaccatcgcggttaaaaaattccggtcgtcggagaaattctcagc |
43715505 |
T |
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