View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6524_low_10 (Length: 301)

Name: NF6524_low_10
Description: NF6524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6524_low_10
NF6524_low_10
[»] chr4 (1 HSPs)
chr4 (18-301)||(26480899-26481181)


Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 301
Target Start/End: Original strand, 26480899 - 26481181
Alignment:
Q  18 agtttgaaatattaatctggttgccccttaccttacaatattgcttcaagcttaaaatgagagaataaatttgcaagcaaagcttgatttagactaatga 117  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26480899 agtttgaaatattaatttggttgccccttaccttacaatattgcttcaagcttaaaatgagagaataaatttgcaagcaaagcttgatttagactaatga 26480998  T
Q  118 ataatgttaatgtcaagtggctacatagaaatagaaatgaaagagagagtgtgccctcttgc-aaaacaaaaatttgataaataaaaatccatgcgagtt 216  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||    
T  26480999 ataatgttaatgtcaagtggctacatagaaatagaaatgaa--agagagtgtgccctcttgcaaaaacaaaaatttgataaatgaaaatccatgcgtgtt 26481096  T
Q  217 aggtctcgaagactaaccatgctcgtatacaacttcaacgctcaaaaaacaccgataaaagaacacttgatttatccatcaggat 301  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  26481097 aggtctcgaagactaaccatgttcgtatacaacttcaacgctcaaaaaacaccgacaaaagtacacttgatttatccatcaggat 26481181  T

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