View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6524_low_12 (Length: 277)
Name: NF6524_low_12
Description: NF6524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6524_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 267
Target Start/End: Original strand, 1696144 - 1696392
Alignment:
| Q |
19 |
acagtccaaacgagataacattccctgcattcaaatttcacaaaaatcaatcagaaacatgtatgattaatcgattaacataaaaagctaaaatcaatcg |
118 |
Q |
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| T |
1696144 |
acagtccaaacgagataacattccctgcattcaaatttcacaaaaatcaatcagaaacatgtatgattaatcgattaacataaaaagctaaaatcaatcg |
1696243 |
T |
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| Q |
119 |
taactgaactaaagacttctaaaatcgattatcagaaaaagttaaaattatactttatgcatgcatgcatgataatcgattatgagaaaaagttaaaata |
218 |
Q |
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| T |
1696244 |
taactgaactaaaaacttccaaaatcgattatcagaaaaagttaaaattatactttatgcatgcatgcatgataatcgattatgataaaaagttaaaata |
1696343 |
T |
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| Q |
219 |
aactgaaatgatactgaaaagagaagaagaagtgattaacaaacctatg |
267 |
Q |
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| T |
1696344 |
aactgaaatgatactgaaaagagaagaagaagtgattaacaaacctatg |
1696392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 19 - 267
Target Start/End: Original strand, 1685595 - 1685835
Alignment:
| Q |
19 |
acagtccaaacgagataacattccctgcattcaaa-tttcacaaaa--atcaatcagaaacatgtatgattaatcgattaacataaaaagctaaaatcaa |
115 |
Q |
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|||||||||||||||||||||||||| |||||||| ||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
1685595 |
acagtccaaacgagataacattcccttcattcaaaatttcagaaaaaaatcaatcagaaacatgtatgattaatcgattaacacaaaaagctaaaatcaa |
1685694 |
T |
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| Q |
116 |
tcgtaactgaactaaagacttctaaaatcgattatcagaaaaagttaaaattatactttatgcatgcatgcatgataatcgattatgagaaaaagttaaa |
215 |
Q |
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|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1685695 |
tcgtaactgaactaaaaacttcaaaaatcgattatcagaaaaagttaaaattatactttatgcatgcatgcatgataatcgattatgataaaaagttaaa |
1685794 |
T |
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| Q |
216 |
ataaactgaaatgatactgaaaagagaagaagaagtgattaacaaacctatg |
267 |
Q |
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| T |
1685795 |
ataa-----------actgaaaagagaagaagaagtgattaacaaacctatg |
1685835 |
T |
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