View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6524_low_14 (Length: 217)
Name: NF6524_low_14
Description: NF6524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6524_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 26481182 - 26481387
Alignment:
| Q |
1 |
tcaaaactaggtcattgtaagatcttagctgaatcgatattaaatgaagtgccctcttgcaagtttgcaaagcaccatcttacaacatgatcaaatttta |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26481182 |
tcaaaactaggtcattgtaagatcttagctgaattgatattaaatgaagtgccctcttgcaagtttgcaaagcaccatcttacaacatgatcaaatttta |
26481281 |
T |
|
| Q |
101 |
cctataagaaaggtatgtgtcattagaatgacaaataactaattataacnnnnnnnnnntcaatgtcatgtttagcaactaaatatgatgtcaattccta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
26481282 |
cctataagaaaggtatgtgtcattagaatgacaaataactaattataac-aaaaaaaaatcaatgtcatgtttagcagctaaatatgatgtcaattccta |
26481380 |
T |
|
| Q |
201 |
acctatg |
207 |
Q |
| |
|
||||||| |
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|
| T |
26481381 |
acctatg |
26481387 |
T |
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