View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6524_low_2 (Length: 559)

Name: NF6524_low_2
Description: NF6524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6524_low_2
NF6524_low_2
[»] chr6 (9 HSPs)
chr6 (48-543)||(33217122-33217610)
chr6 (408-526)||(4006612-4006730)
chr6 (408-473)||(1402947-1403012)
chr6 (54-115)||(3180989-3181050)
chr6 (58-103)||(32171560-32171605)
chr6 (402-453)||(2117374-2117425)
chr6 (412-449)||(1904790-1904827)
chr6 (412-449)||(1909023-1909060)
chr6 (408-493)||(29274283-29274368)
[»] chr3 (9 HSPs)
chr3 (408-501)||(1395594-1395687)
chr3 (370-437)||(14548739-14548804)
chr3 (48-110)||(20669701-20669763)
chr3 (408-482)||(24235737-24235811)
chr3 (409-467)||(32555036-32555094)
chr3 (56-105)||(21872225-21872274)
chr3 (402-447)||(35246639-35246684)
chr3 (466-526)||(4534468-4534528)
chr3 (408-484)||(33307506-33307582)
[»] chr1 (14 HSPs)
chr1 (60-106)||(5924108-5924154)
chr1 (59-106)||(27807209-27807256)
chr1 (54-115)||(15361802-15361861)
chr1 (488-528)||(24153446-24153486)
chr1 (408-484)||(48830130-48830206)
chr1 (408-491)||(17269183-17269266)
chr1 (408-467)||(27738234-27738293)
chr1 (408-483)||(42556685-42556760)
chr1 (53-104)||(44815234-44815285)
chr1 (476-526)||(29665884-29665934)
chr1 (486-526)||(28075669-28075709)
chr1 (408-464)||(28467361-28467417)
chr1 (409-449)||(29007771-29007811)
chr1 (48-104)||(31517671-31517727)
[»] chr5 (6 HSPs)
chr5 (408-484)||(18704090-18704165)
chr5 (408-449)||(34205214-34205255)
chr5 (72-106)||(34205348-34205382)
chr5 (370-437)||(37588378-37588443)
chr5 (408-474)||(39823175-39823241)
chr5 (420-484)||(35135728-35135792)
[»] chr8 (5 HSPs)
chr8 (54-113)||(2364382-2364441)
chr8 (54-110)||(37353097-37353153)
chr8 (408-480)||(38561670-38561742)
chr8 (422-525)||(11493871-11493974)
chr8 (59-106)||(14926911-14926958)
[»] chr2 (13 HSPs)
chr2 (408-491)||(10143105-10143188)
chr2 (422-482)||(6547852-6547912)
chr2 (408-467)||(11513855-11513914)
chr2 (48-99)||(34927046-34927097)
chr2 (54-105)||(43456637-43456688)
chr2 (48-102)||(17443541-17443595)
chr2 (48-106)||(32821892-32821950)
chr2 (408-482)||(43199356-43199430)
chr2 (410-491)||(11344340-11344421)
chr2 (408-449)||(36863679-36863720)
chr2 (58-106)||(15370252-15370300)
chr2 (58-102)||(19243626-19243670)
chr2 (409-449)||(33944580-33944620)
[»] chr4 (10 HSPs)
chr4 (408-481)||(49219082-49219155)
chr4 (402-454)||(24091433-24091485)
chr4 (54-104)||(21157857-21157907)
chr4 (54-104)||(28615613-28615663)
chr4 (408-449)||(8130149-8130190)
chr4 (419-484)||(44119227-44119292)
chr4 (408-485)||(55870395-55870472)
chr4 (370-447)||(18628561-18628636)
chr4 (59-103)||(30770983-30771027)
chr4 (408-484)||(45128364-45128440)
[»] chr7 (10 HSPs)
chr7 (408-484)||(1417204-1417280)
chr7 (408-484)||(49060480-49060556)
chr7 (481-528)||(1422795-1422842)
chr7 (420-491)||(31002694-31002765)
chr7 (408-485)||(5006563-5006640)
chr7 (410-491)||(5373158-5373239)
chr7 (408-449)||(24909639-24909680)
chr7 (486-526)||(5499310-5499350)
chr7 (408-452)||(36537892-36537936)
chr7 (58-106)||(48157049-48157097)
[»] scaffold0024 (1 HSPs)
scaffold0024 (408-491)||(27509-27592)


Alignment Details
Target: chr6 (Bit Score: 391; Significance: 0; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 48 - 543
Target Start/End: Original strand, 33217122 - 33217610
Alignment:
Q  48 ataaattcttccaaacagtcttacaaatgcttatgtctgtaaataagttcaaataagtcgatcaaaatgcgctcttagtagttttttgttattaatatta 147  Q
    |||||||||||||||||||||||||||||      |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33217122 ataaattcttccaaacagtcttacaaatg------tctgtaaataagtttaaataagtcgatcaaaatgcgctcttagtagttttttgttattaatatta 33217215  T
Q  148 tatcatgttttacttgtctaaatattataccactttcattgttgatttactgtccctagatttttctaatatttgtgtgtgctaataaagtgttgaaaag 247  Q
    |||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33217216 tatcatgttttacttgtctaaatattttaccactat-attgttgatttactgtccctagatttttctaatatttgtgtgtgctaataaagtgttgaaaag 33217314  T
Q  248 caagaagaaaatgagatgattgagagcaagattagatgannnnnnnnnnnnn-atcttgttaattttgatcttatgttagcctatagtgttattgatcct 346  Q
    |||||||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||||||||||||||    
T  33217315 caagaagaaaatgagatgattgagagcaagattagatgatttttttactttttatcttgttaattttgatcttatgttagcctatagtgttattgatcct 33217414  T
Q  347 cttgtttgtgtactagaatttgcttttcagcttattccataagctctcaaccataataacctatgaaaacaatttatagcttatataaaaatattttgac 446  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||    
T  33217415 cttgtttgtgtactagaatttgcttttcagcttattccataagctctcaaccataataacctacgaaaacaatttatagcttatataaaaatattttaac 33217514  T
Q  447 tttgtttaagcttttgttgtataaataaattatacatatgcacttctgctataagtggttaattaaactgtttatccaaataaattgaattcataat 543  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33217515 tttg-ttaagcttttgttgtataaataaattatacatatgcacttctgctataagtggttaattaaactgtttatccaaataaattgaattcataat 33217610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 408 - 526
Target Start/End: Complemental strand, 4006730 - 4006612
Alignment:
Q  408 tatgaaaacaatttatagcttatataaaaatattttgactttgtttaagcttttgttgtataaataaattatacatatgcacttctgctataagtggtta 507  Q
    ||||||||||| |||||||||||||||||| | ||||||||| ||| | | |||||| || |||||  |||| |||| |||||| ||||||||| | |||    
T  4006730 tatgaaaacaacttatagcttatataaaaacaatttgactttattttatcatttgttatagaaatatcttatgcataagcacttatgctataagggatta 4006631  T
Q  508 attaaactgtttatccaaa 526  Q
    |||||  || |||||||||    
T  4006630 attaagttgcttatccaaa 4006612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 408 - 473
Target Start/End: Complemental strand, 1403012 - 1402947
Alignment:
Q  408 tatgaaaacaatttatagcttatataaaaatattttgactttgtttaagcttttgttgtataaata 473  Q
    ||||||||||||||||||||||||| |||||| ||| ||||| ||| | |||||||| || |||||    
T  1403012 tatgaaaacaatttatagcttatatgaaaatagtttaactttattttatcttttgttatagaaata 1402947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 3181050 - 3180989
Alignment:
Q  54 tcttccaaacagtcttacaaatgcttatgtctgtaaataagttcaaataagtcgatcaaaat 115  Q
    |||| |||| ||||| |||| |||||||||||||| ||||||||||||||||| | ||||||    
T  3181050 tctttcaaatagtctcacaagtgcttatgtctgtagataagttcaaataagtcaaccaaaat 3180989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 32171560 - 32171605
Alignment:
Q  58 ccaaacagtcttacaaatgcttatgtctgtaaataagttcaaataa 103  Q
    |||| |||||| ||||||||||||||| ||||||||||||||||||    
T  32171560 ccaaccagtctcacaaatgcttatgtcagtaaataagttcaaataa 32171605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 453
Target Start/End: Complemental strand, 2117425 - 2117374
Alignment:
Q  402 ataacctatgaaaacaatttatagcttatataaaaatattttgactttgttt 453  Q
    ||||| ||||||||||| |||||| |||||| |||||| |||||||||||||    
T  2117425 ataacttatgaaaacaacttatagattatatgaaaatagtttgactttgttt 2117374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 449
Target Start/End: Complemental strand, 1904827 - 1904790
Alignment:
Q  412 aaaacaatttatagcttatataaaaatattttgacttt 449  Q
    |||||||| ||||||||||||||||||| |||||||||    
T  1904827 aaaacaatctatagcttatataaaaataatttgacttt 1904790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 449
Target Start/End: Complemental strand, 1909060 - 1909023
Alignment:
Q  412 aaaacaatttatagcttatataaaaatattttgacttt 449  Q
    |||||||| ||||||||||||||||||| |||||||||    
T  1909060 aaaacaatctatagcttatataaaaataatttgacttt 1909023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 493
Target Start/End: Original strand, 29274283 - 29274368
Alignment:
Q  408 tatgaaaacaatttatagcttatataaaaatattttgactttgtttaagcttttgttgtataaataaattatacatatgcacttct 493  Q
    |||||||||| |||||||||||||| |||| | ||||||||| ||| | |||||| | || |||||  ||||||||| ||| ||||    
T  29274283 tatgaaaacagtttatagcttatatgaaaacaatttgactttattttatcttttgctatagaaatagcttatacataagcatttct 29274368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 408 - 501
Target Start/End: Complemental strand, 1395687 - 1395594
Alignment:
Q  408 tatgaaaacaatttatagcttatataaaaatattttgactttgtttaagcttttgttgtataaataaattatacatatgcacttctgctataag 501  Q
    |||||||||| || ||||||||||| |||||| ||||||||| ||| | |||||||| || |||||  |||||||||||||||| |||||||||    
T  1395687 tatgaaaacagttcatagcttatatgaaaataatttgactttattttatcttttgttatagaaatagcttatacatatgcacttttgctataag 1395594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 370 - 437
Target Start/End: Original strand, 14548739 - 14548804
Alignment:
Q  370 ttttcagcttatt-ccataagctctcaaccataataacctatgaaaacaatttatagcttatataaaaa 437  Q
    ||||||||||||| ||||||||||||   || |||||| ||||||||||| ||||||||||||| ||||    
T  14548739 ttttcagcttatttccataagctctc---cagaataacttatgaaaacaacttatagcttatatgaaaa 14548804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 20669701 - 20669763
Alignment:
Q  48 ataaattcttccaaacagtcttacaaatgcttatgtctgtaaataagttcaaataagtcgatc 110  Q
    |||| |||||||||||||||| | | ||| ||||||| ||||||||| ||| |||||||||||    
T  20669701 ataagttcttccaaacagtctaaaatatgtttatgtcagtaaataagctcagataagtcgatc 20669763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 408 - 482
Target Start/End: Original strand, 24235737 - 24235811
Alignment:
Q  408 tatgaaaacaatttatagcttatataaaaatattttgactttgtttaagcttttgttgtataaataaattataca 482  Q
    ||||||||||| |||||||||||||  ||||| ||||||||| | | | |||||||| || |||||| |||||||    
T  24235737 tatgaaaacaacttatagcttatattcaaatagtttgactttatattatcttttgttatagaaataacttataca 24235811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 409 - 467
Target Start/End: Original strand, 32555036 - 32555094
Alignment:
Q  409 atgaaaacaatttatagcttatataaaaatattttgactttgtttaagcttttgttgta 467  Q
    |||||||||| ||||||||||||  |||||| ||||||||| ||| | |||||||||||    
T  32555036 atgaaaacaacttatagcttataggaaaataatttgactttattttatcttttgttgta 32555094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 21872274 - 21872225
Alignment:
Q  56 ttccaaacagtcttacaaatgcttatgtctgtaaataagttcaaataagt 105  Q
    ||||||||||||| |||| |||||||||| ||| ||||| ||||||||||    
T  21872274 ttccaaacagtctcacaagtgcttatgtcagtagataagatcaaataagt 21872225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 447
Target Start/End: Original strand, 35246639 - 35246684
Alignment:
Q  402 ataacctatgaaaacaatttatagcttatataaaaatattttgact 447  Q
    ||||| ||| ||||||| |||||||||||||||||||| |||||||    
T  35246639 ataacttataaaaacaacttatagcttatataaaaatagtttgact 35246684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 466 - 526
Target Start/End: Original strand, 4534468 - 4534528
Alignment:
Q  466 tataaataaattatacatatgcacttctgctataagtggttaattaaactgtttatccaaa 526  Q
    ||||||||| |||||| || |||||| | ||||||||| ||||||||  ||||||||||||    
T  4534468 tataaataacttatacgtaagcacttatactataagtgcttaattaagttgtttatccaaa 4534528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 408 - 484
Target Start/End: Original strand, 33307506 - 33307582
Alignment:
Q  408 tatgaaaacaatttatagcttatataaaaatattttgactttgtttaagcttttgttgtataaataaattatacata 484  Q
    ||||||||||  ||||| |||||||||||||| |||| | |||||| | |||||| | || |||||| |||||||||    
T  33307506 tatgaaaacatcttataacttatataaaaatagtttggcattgttttatcttttgctctagaaataatttatacata 33307582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 60 - 106
Target Start/End: Original strand, 5924108 - 5924154
Alignment:
Q  60 aaacagtcttacaaatgcttatgtctgtaaataagttcaaataagtc 106  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||    
T  5924108 aaacagtcttacaaatgcgtatgtcagtaaataagttcaaataagtc 5924154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 59 - 106
Target Start/End: Original strand, 27807209 - 27807256
Alignment:
Q  59 caaacagtcttacaaatgcttatgtctgtaaataagttcaaataagtc 106  Q
    |||||||||||||||||||||||||| ||| | |||||||||||||||    
T  27807209 caaacagtcttacaaatgcttatgtcagtagaaaagttcaaataagtc 27807256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 15361802 - 15361861
Alignment:
Q  54 tcttccaaacagtcttacaaatgcttatgtctgtaaataagttcaaataagtcgatcaaaat 115  Q
    ||||| ||||||||  ||||||||||||| | ||||||||||||||||||||||||| ||||    
T  15361802 tcttctaaacagtc--acaaatgcttatgacagtaaataagttcaaataagtcgatccaaat 15361861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 488 - 528
Target Start/End: Complemental strand, 24153486 - 24153446
Alignment:
Q  488 acttctgctataagtggttaattaaactgtttatccaaata 528  Q
    |||||||||||||||||| |||||| |||||||||||||||    
T  24153486 acttctgctataagtggtcaattaagctgtttatccaaata 24153446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 408 - 484
Target Start/End: Original strand, 48830130 - 48830206
Alignment:
Q  408 tatgaaaacaatttatagcttatataaaaatattttgactttgtttaagcttttgttgtataaataaattatacata 484  Q
    |||||||||| |||||||||||||| |||||| ||||||||| ||| | |||| ||  || |||||| |||||||||    
T  48830130 tatgaaaacagtttatagcttatatgaaaatagtttgactttattttatctttggtaatagaaataacttatacata 48830206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 491
Target Start/End: Complemental strand, 17269266 - 17269183
Alignment:
Q  408 tatgaaaacaatttatagcttatataaaaatattttgactttgtttaagcttttgttgtataaataaattatacatatgcactt 491  Q
    ||||||||||| |||| |||||||| |||| | ||||||||| |||   |||||||| || |||||| ||||||||| ||||||    
T  17269266 tatgaaaacaacttattgcttatatgaaaacaatttgactttattttcacttttgttctagaaataacttatacataagcactt 17269183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 467
Target Start/End: Original strand, 27738234 - 27738293
Alignment:
Q  408 tatgaaaacaatttatagcttatataaaaatattttgactttgtttaagcttttgttgta 467  Q
    ||||||||||| ||||||||||||| |||| | ||||||||| ||| | |||||||||||    
T  27738234 tatgaaaacaaattatagcttatatgaaaacaatttgactttattttatcttttgttgta 27738293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 483
Target Start/End: Original strand, 42556685 - 42556760
Alignment:
Q  408 tatgaaaacaatttatagcttatataaaaatattttgactttgtttaagcttttgttgtataaataaattatacat 483  Q
    ||||||||||| ||||||||||||||||| || ||||| ||| ||| | |||||||  || |||||| ||||||||    
T  42556685 tatgaaaacaacttatagcttatataaaagtagtttgattttatttcatcttttgtcatagaaataacttatacat 42556760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 44815285 - 44815234
Alignment:
Q  53 ttcttccaaacagtcttacaaatgcttatgtctgtaaataagttcaaataag 104  Q
    |||||||| | ||||| ||||||||||||||| ||| |||||||||||||||    
T  44815285 ttcttccacaaagtctcacaaatgcttatgtcagtagataagttcaaataag 44815234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 476 - 526
Target Start/End: Original strand, 29665884 - 29665934
Alignment:
Q  476 ttatacatatgcacttctgctataagtggttaattaaactgtttatccaaa 526  Q
    ||||||||| || ||| ||||||||||| |||||||| |||||||||||||    
T  29665884 ttatacataagcgcttatgctataagtgtttaattaagctgtttatccaaa 29665934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 486 - 526
Target Start/End: Complemental strand, 28075709 - 28075669
Alignment:
Q  486 gcacttctgctataagtggttaattaaactgtttatccaaa 526  Q
    |||||| ||||||||||| ||||||||| ||||||||||||    
T  28075709 gcacttgtgctataagtgcttaattaaattgtttatccaaa 28075669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 408 - 464
Target Start/End: Original strand, 28467361 - 28467417
Alignment:
Q  408 tatgaaaacaatttatagcttatataaaaatattttgactttgtttaagcttttgtt 464  Q
    ||||||||||| || |||||||||| |||||| ||||||||| ||| | ||||||||    
T  28467361 tatgaaaacaacttgtagcttatatgaaaataatttgactttattttatcttttgtt 28467417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 409 - 449
Target Start/End: Original strand, 29007771 - 29007811
Alignment:
Q  409 atgaaaacaatttatagcttatataaaaatattttgacttt 449  Q
    |||||||||| ||||||||||||| |||||| |||||||||    
T  29007771 atgaaaacaacttatagcttatatgaaaatagtttgacttt 29007811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 31517727 - 31517671
Alignment:
Q  48 ataaattcttccaaacagtcttacaaatgcttatgtctgtaaataagttcaaataag 104  Q
    |||| |||| ||||||||||| |||| |||||||| | ||||||||| |||||||||    
T  31517727 ataagttctcccaaacagtctcacaagtgcttatgccagtaaataagctcaaataag 31517671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 408 - 484
Target Start/End: Original strand, 18704090 - 18704165
Alignment:
Q  408 tatgaaaacaatttatagcttatataaaaatattttgactttgtttaagcttttgttgtataaataaattatacata 484  Q
    ||||||||||| ||||||||||||||||||||  |||||||| ||| | |||||||| || |||||| |||||||||    
T  18704090 tatgaaaacaacttatagcttatataaaaatagcttgactttattt-atcttttgttatagaaataacttatacata 18704165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 408 - 449
Target Start/End: Complemental strand, 34205255 - 34205214
Alignment:
Q  408 tatgaaaacaatttatagcttatataaaaatattttgacttt 449  Q
    ||||||||||| |||||||||||||||||||| |||||||||    
T  34205255 tatgaaaacaacttatagcttatataaaaataatttgacttt 34205214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 72 - 106
Target Start/End: Original strand, 34205348 - 34205382
Alignment:
Q  72 aaatgcttatgtctgtaaataagttcaaataagtc 106  Q
    ||||||||||||| |||||||||||||||||||||    
T  34205348 aaatgcttatgtcagtaaataagttcaaataagtc 34205382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 370 - 437
Target Start/End: Original strand, 37588378 - 37588443
Alignment:
Q  370 ttttcagcttatt-ccataagctctcaaccataataacctatgaaaacaatttatagcttatataaaaa 437  Q
    ||||||||||||| ||||||||||||   || |||||| ||||||||||| ||||||||||||| ||||    
T  37588378 ttttcagcttatttccataagctctc---cagaataacttatgaaaacaacttatagcttatatgaaaa 37588443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 408 - 474
Target Start/End: Original strand, 39823175 - 39823241
Alignment:
Q  408 tatgaaaacaatttatagcttatataaaaatattttgactttgtttaagcttttgttgtataaataa 474  Q
    ||||||||||| || |||||||||| ||| || ||||||||| ||| | |||||||| |||||||||    
T  39823175 tatgaaaacaacttgtagcttatatgaaagtagtttgactttattttatcttttgttatataaataa 39823241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 420 - 484
Target Start/End: Original strand, 35135728 - 35135792
Alignment:
Q  420 ttatagcttatataaaaatattttgactttgtttaagcttttgttgtataaataaattatacata 484  Q
    ||||||||||||| |||||| ||||||||| ||| | |||||||| || |||||  |||||||||    
T  35135728 ttatagcttatatgaaaatagtttgactttattttatcttttgttatagaaatatcttatacata 35135792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 54 - 113
Target Start/End: Complemental strand, 2364441 - 2364382
Alignment:
Q  54 tcttccaaacagtcttacaaatgcttatgtctgtaaataagttcaaataagtcgatcaaa 113  Q
    ||||||||||||||| |||| | |||||||| | | ||||||||||||||||||||||||    
T  2364441 tcttccaaacagtctcacaagtacttatgtcagaagataagttcaaataagtcgatcaaa 2364382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 110
Target Start/End: Complemental strand, 37353153 - 37353097
Alignment:
Q  54 tcttccaaacagtcttacaaatgcttatgtctgtaaataagttcaaataagtcgatc 110  Q
    ||||||||||||||| |||| |||||||||| ||| ||| ||||| |||||||||||    
T  37353153 tcttccaaacagtctcacaagtgcttatgtcagtagataggttcagataagtcgatc 37353097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 408 - 480
Target Start/End: Complemental strand, 38561742 - 38561670
Alignment:
Q  408 tatgaaaacaatttatagcttatataaaaatattttgactttgtttaagcttttgttgtataaataaattata 480  Q
    ||||||||||| ||||||  || ||||||||| ||||||||| ||| | |||||||| ||||||||| |||||    
T  38561742 tatgaaaacaacttatagtatagataaaaatagtttgactttattttatcttttgttatataaataacttata 38561670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 525
Target Start/End: Complemental strand, 11493974 - 11493871
Alignment:
Q  422 atagcttatataaaaatattttgactttgtttaagcttttgttgtataaataaattatacatatgcacttctgctataagtggttaattaaactgtttat 521  Q
    |||||| ||||||||| | |||||||||  || | ||||||||||  |||||| ||||  | | |||||| | ||||||||| |||||||| ||||||||    
T  11493974 atagctcatataaaaaaactttgactttactttatcttttgttgtgaaaataacttatgaacaagcacttatactataagtgcttaattaagctgtttat 11493875  T
Q  522 ccaa 525  Q
    ||||    
T  11493874 ccaa 11493871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 106
Target Start/End: Complemental strand, 14926958 - 14926911
Alignment:
Q  59 caaacagtcttacaaatgcttatgtctgtaaataagttcaaataagtc 106  Q
    |||||||||| |||| |||||||| | |||||||||||||||||||||    
T  14926958 caaacagtctcacaagtgcttatgccagtaaataagttcaaataagtc 14926911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 408 - 491
Target Start/End: Complemental strand, 10143188 - 10143105
Alignment:
Q  408 tatgaaaacaatttatagcttatataaaaatattttgactttgtttaagcttttgttgtataaataaattatacatatgcactt 491  Q
    |||||||| || |||||||||||||||||| | ||||||||  ||| | |||||||| || |||||| ||||||||| ||||||    
T  10143188 tatgaaaaaaacttatagcttatataaaaacagtttgacttaattttatcttttgttatagaaataacttatacataagcactt 10143105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 422 - 482
Target Start/End: Complemental strand, 6547912 - 6547852
Alignment:
Q  422 atagcttatataaaaatattttgactttgtttaagcttttgttgtataaataaattataca 482  Q
    ||||||||||||||||||||||||||||||||   |||||| | || |||||| |||||||    
T  6547912 atagcttatataaaaatattttgactttgttttgacttttgctatagaaataacttataca 6547852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 467
Target Start/End: Complemental strand, 11513914 - 11513855
Alignment:
Q  408 tatgaaaacaatttatagcttatataaaaatattttgactttgtttaagcttttgttgta 467  Q
    ||||||||||| ||||||||||||| |||| | ||||||||| ||| | |||||||||||    
T  11513914 tatgaaaacaacttatagcttatatgaaaacaatttgactttattttatcttttgttgta 11513855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 99
Target Start/End: Original strand, 34927046 - 34927097
Alignment:
Q  48 ataaattcttccaaacagtcttacaaatgcttatgtctgtaaataagttcaa 99  Q
    |||| |||||||||||||||||| || |||||||||| ||||||||| ||||    
T  34927046 ataagttcttccaaacagtcttataagtgcttatgtcagtaaataagctcaa 34927097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 43456688 - 43456637
Alignment:
Q  54 tcttccaaacagtcttacaaatgcttatgtctgtaaataagttcaaataagt 105  Q
    |||| ||||||||||||||| || ||||||  ||||||||||||||||||||    
T  43456688 tctttcaaacagtcttacaagtgtttatgtgagtaaataagttcaaataagt 43456637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 17443595 - 17443541
Alignment:
Q  48 ataaattcttccaaacagtcttacaaatgcttatgtctgtaaataagttcaaata 102  Q
    ||||| ||||||||||||||| |||| ||||||| || ||| |||||||||||||    
T  17443595 ataaactcttccaaacagtctcacaagtgcttatatcagtatataagttcaaata 17443541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 32821892 - 32821950
Alignment:
Q  48 ataaattcttccaaacagtcttacaaatgcttatgtctgtaaataagttcaaataagtc 106  Q
    ||||| |||||||||||||||| |||||||||| ||  ||| ||||| |||||||||||    
T  32821892 ataaactcttccaaacagtcttgcaaatgcttacgttggtagataagctcaaataagtc 32821950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 408 - 482
Target Start/End: Complemental strand, 43199430 - 43199356
Alignment:
Q  408 tatgaaaacaatttatagcttatataaaaatattttgactttgtttaagcttttgttgtataaataaattataca 482  Q
    ||||||||||| ||||||||||||  || ||| ||| ||||| ||| | ||||||||||| |||||| |||||||    
T  43199430 tatgaaaacaacttatagcttatacgaagataatttaactttattttatcttttgttgtagaaataacttataca 43199356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 491
Target Start/End: Original strand, 11344340 - 11344421
Alignment:
Q  410 tgaaaacaatttatagcttatataaaaatattttgactttgtttaagcttttgttgtataaataaattatacatatgcactt 491  Q
    ||||||||||||||||||| ||| |||| | ||||||||| ||| | |||||||| || |||||  |||| |||| ||||||    
T  11344340 tgaaaacaatttatagcttgtatgaaaacaatttgactttcttttatcttttgttatagaaatatcttatgcataagcactt 11344421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 449
Target Start/End: Original strand, 36863679 - 36863720
Alignment:
Q  408 tatgaaaacaatttatagcttatataaaaatattttgacttt 449  Q
    ||||||||||||||||| |||||||||||||  |||||||||    
T  36863679 tatgaaaacaatttataacttatataaaaattgtttgacttt 36863720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 15370300 - 15370252
Alignment:
Q  58 ccaaacagtcttacaaatgcttatgtctgtaaataagttcaaataagtc 106  Q
    ||||||||||| ||||||||||||| | ||| ||||| |||||||||||    
T  15370300 ccaaacagtctcacaaatgcttatgccagtagataagctcaaataagtc 15370252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 19243626 - 19243670
Alignment:
Q  58 ccaaacagtcttacaaatgcttatgtctgtaaataagttcaaata 102  Q
    ||||||||||| | ||||||||||||| ||| |||||||||||||    
T  19243626 ccaaacagtctcagaaatgcttatgtcagtagataagttcaaata 19243670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 409 - 449
Target Start/End: Complemental strand, 33944620 - 33944580
Alignment:
Q  409 atgaaaacaatttatagcttatataaaaatattttgacttt 449  Q
    |||||||||||||||||||||||| |||| | |||||||||    
T  33944620 atgaaaacaatttatagcttatatgaaaacaatttgacttt 33944580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 408 - 481
Target Start/End: Complemental strand, 49219155 - 49219082
Alignment:
Q  408 tatgaaaacaatttatagcttatataaaaatattttgactttgtttaagcttttgttgtataaataaattatac 481  Q
    ||||||||||| ||||||||||||| |||||| ||||||||| ||| |  ||||||| || |||||| ||||||    
T  49219155 tatgaaaacaacttatagcttatatgaaaataatttgactttattttatattttgttatagaaataacttatac 49219082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 454
Target Start/End: Complemental strand, 24091485 - 24091433
Alignment:
Q  402 ataacctatgaaaacaatttatagcttatataaaaatattttgactttgttta 454  Q
    ||||| |||||||||| |||||||||||||| |||||| ||||||||| ||||    
T  24091485 ataacttatgaaaacagtttatagcttatatgaaaataatttgactttattta 24091433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 21157857 - 21157907
Alignment:
Q  54 tcttccaaacagtcttacaaatgcttatgtctgtaaataagttcaaataag 104  Q
    |||||||||||||||||||| |||||||||| ||| || || |||||||||    
T  21157857 tcttccaaacagtcttacaagtgcttatgtcagtagatgagctcaaataag 21157907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 28615613 - 28615663
Alignment:
Q  54 tcttccaaacagtcttacaaatgcttatgtctgtaaataagttcaaataag 104  Q
    ||||| |||||||||||||||||||||||||  || ||||| |||||||||    
T  28615613 tcttcgaaacagtcttacaaatgcttatgtcattagataagctcaaataag 28615663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 449
Target Start/End: Complemental strand, 8130190 - 8130149
Alignment:
Q  408 tatgaaaacaatttatagcttatataaaaatattttgacttt 449  Q
    |||||||||| |||||||||||||| |||||| |||||||||    
T  8130190 tatgaaaacagtttatagcttatatgaaaataatttgacttt 8130149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 484
Target Start/End: Original strand, 44119227 - 44119292
Alignment:
Q  419 tttatagcttatataaaaatattttgactttgtttaagcttttgttgtataaataaattatacata 484  Q
    |||||||||||||| |||| || |||||||||||| | |||||| | || |||||| |||||||||    
T  44119227 tttatagcttatatgaaaacatattgactttgttttatcttttgctatagaaataacttatacata 44119292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 485
Target Start/End: Original strand, 55870395 - 55870472
Alignment:
Q  408 tatgaaaacaatttatagcttatataaaaatattttgactttgtttaagcttttgttgtataaataaattatacatat 485  Q
    ||||||||||| ||||||||||| | |||| | ||||||||| ||| | |||||||| || ||||  |||||||||||    
T  55870395 tatgaaaacaacttatagcttatgtgaaaacagtttgactttatttgatcttttgttataaaaatggattatacatat 55870472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 447
Target Start/End: Original strand, 18628561 - 18628636
Alignment:
Q  370 ttttcagcttatt-ccataagctctcaaccataataacctatgaaaacaatttatagcttatataaaaatattttgact 447  Q
    ||||||||||||| ||||||||||||   ||  ||||| |||||||||| |||||| |||||||||||| | |||||||    
T  18628561 ttttcagcttatttccataagctctc---caagataacttatgaaaacagtttataacttatataaaaacagtttgact 18628636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 30770983 - 30771027
Alignment:
Q  59 caaacagtcttacaaatgcttatgtctgtaaataagttcaaataa 103  Q
    |||||||||||||||||||||||||| ||  |||| |||||||||    
T  30770983 caaacagtcttacaaatgcttatgtcagtggataaattcaaataa 30771027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 408 - 484
Target Start/End: Original strand, 45128364 - 45128440
Alignment:
Q  408 tatgaaaacaatttatagcttatataaaaatattttgactttgtttaagcttttgttgtataaataaattatacata 484  Q
    ||||||||||||||||||||||||| | |||| ||||| ||  ||| | |||||||| || |||||  |||||||||    
T  45128364 tatgaaaacaatttatagcttatatgagaataatttgatttgattttatcttttgttatagaaatagtttatacata 45128440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 408 - 484
Target Start/End: Complemental strand, 1417280 - 1417204
Alignment:
Q  408 tatgaaaacaatttatagcttatataaaaatattttgactttgtttaagcttttgttgtataaataaattatacata 484  Q
    ||||||||||| |||| |||||||| |||| | ||||||||| ||| | |||||||| ||||||||  |||||||||    
T  1417280 tatgaaaacaacttattgcttatatgaaaacaatttgactttattttatcttttgttatataaatagtttatacata 1417204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 408 - 484
Target Start/End: Complemental strand, 49060556 - 49060480
Alignment:
Q  408 tatgaaaacaatttatagcttatataaaaatattttgactttgtttaagcttttgttgtataaataaattatacata 484  Q
    |||||||| || |||||||||||||||||||| ||||||||| ||| |  ||||||| || |||||  |||||||||    
T  49060556 tatgaaaataacttatagcttatataaaaataatttgactttattttattttttgttatagaaatagcttatacata 49060480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 528
Target Start/End: Complemental strand, 1422842 - 1422795
Alignment:
Q  481 catatgcacttctgctataagtggttaattaaactgtttatccaaata 528  Q
    ||||||||||| |||||||| || |||||||| |||||||||||||||    
T  1422842 catatgcacttatgctataaatgtttaattaagctgtttatccaaata 1422795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 491
Target Start/End: Complemental strand, 31002765 - 31002694
Alignment:
Q  420 ttatagcttatataaaaatattttgactttgtttaagcttttgttgtataaataaattatacatatgcactt 491  Q
    ||||||||||||| |||||||||||||||| ||| | ||||||| ||  |||||  ||||||||| ||||||    
T  31002765 ttatagcttatatgaaaatattttgactttattttatcttttgtggttgaaatagtttatacataagcactt 31002694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 485
Target Start/End: Original strand, 5006563 - 5006640
Alignment:
Q  408 tatgaaaacaatttatagcttatataaaaatattttgactttgtttaagcttttgttgtataaataaattatacatat 485  Q
    ||||||||||||||||| ||||||| |||| | ||||||||| ||| | |||||||| ||  ||||  ||||||||||    
T  5006563 tatgaaaacaatttataccttatatgaaaacagtttgactttattttatcttttgttataggaatagcttatacatat 5006640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 491
Target Start/End: Complemental strand, 5373239 - 5373158
Alignment:
Q  410 tgaaaacaatttatagcttatataaaaatattttgactttgtttaagcttttgttgtataaataaattatacatatgcactt 491  Q
    ||||||||| ||||| ||||||||||||| ||| |||||| ||| | |||||||| || |||||   |||||||| ||||||    
T  5373239 tgaaaacaacttataacttatataaaaatgtttggactttattttatcttttgttatagaaatagcatatacataagcactt 5373158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 449
Target Start/End: Complemental strand, 24909680 - 24909639
Alignment:
Q  408 tatgaaaacaatttatagcttatataaaaatattttgacttt 449  Q
    ||||||||||| ||||||||||||| |||||| |||||||||    
T  24909680 tatgaaaacaacttatagcttatatgaaaataatttgacttt 24909639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 486 - 526
Target Start/End: Original strand, 5499310 - 5499350
Alignment:
Q  486 gcacttctgctataagtggttaattaaactgtttatccaaa 526  Q
    |||||| ||| ||||||||||||||||| ||||||||||||    
T  5499310 gcacttttgccataagtggttaattaaattgtttatccaaa 5499350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 408 - 452
Target Start/End: Complemental strand, 36537936 - 36537892
Alignment:
Q  408 tatgaaaacaatttatagcttatataaaaatattttgactttgtt 452  Q
    |||||||||| || ||||||||||| |||||| ||||||||||||    
T  36537936 tatgaaaacacttcatagcttatatgaaaataatttgactttgtt 36537892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 48157097 - 48157049
Alignment:
Q  58 ccaaacagtcttacaaatgcttatgtctgtaaataagttcaaataagtc 106  Q
    ||||||||||| |||||||||||  || ||||||||| |||||||||||    
T  48157097 ccaaacagtctcacaaatgcttaaatcagtaaataagctcaaataagtc 48157049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 491
Target Start/End: Complemental strand, 27592 - 27509
Alignment:
Q  408 tatgaaaacaatttatagcttatataaaaatattttgactttgtttaagcttttgttgtataaataaattatacatatgcactt 491  Q
    ||||||||||| |||||| |||||| |||| | ||||||||| ||| | ||| |||| || |||||| ||||||||| ||||||    
T  27592 tatgaaaacaacttatagtttatatgaaaacaatttgactttattttatcttctgttatagaaataacttatacataagcactt 27509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University