View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6524_low_3 (Length: 541)
Name: NF6524_low_3
Description: NF6524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6524_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 5 - 524
Target Start/End: Original strand, 52511230 - 52511753
Alignment:
| Q |
5 |
tgtcgaagaaaatgttatctcaatttctgtccaagtaacacaggtgtgaacaaataaggcataaattttttagccgctgttcaatttttaagaccaatat |
104 |
Q |
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| T |
52511230 |
tgtcgaaaaaaatgttatctcaatttctgtccaagtaacacaggtgtgaacaaataaggcataaattttttagccgctgttcaatttttaagagcaatat |
52511329 |
T |
|
| Q |
105 |
aaagagcttgaatctgcttgacacatcttggaggatataataccctagatacacatgagttgaataaaaatgtacgtatttacttggtaactatctatat |
204 |
Q |
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| T |
52511330 |
aaagagcttgaatctgcttgacacatcttggaggatataataccctagatacacatgagttgaataaaaatgtacgtatttacttggtaactatctatat |
52511429 |
T |
|
| Q |
205 |
aggaccatacatagcaatacttgctagaagtgtctgttgaatgtttacactata----cctgacattttggaagtcattttggtaatcgtgaatatgggc |
300 |
Q |
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| T |
52511430 |
aggaccttacatagcaatacttggtagaagtgtttgttgaatgtttacactatatatacctgacattttggaagtcattttggtaatcgtgaatattggc |
52511529 |
T |
|
| Q |
301 |
aatcttagtattgaaaaatggtatttctttcatacaaaatattgaaattcaataggtgctaactagtaaccaagcaaaatttagggttctggaatacctc |
400 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
52511530 |
aatcttagtattgaaaaatggtttttctttcatacaaaatattgaaattcaataggtgctaactagtaaccgagcaaaatttagggttctggaatgcctc |
52511629 |
T |
|
| Q |
401 |
cagaccaaatatattctaagctaggagccgattaccattgcagtcactggtggaccagaaataagcattagcaagcctcaattcagttgtggtcacaaac |
500 |
Q |
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| T |
52511630 |
cagaccaaatatattctaagctaggagccgattaccattgcagtcactggtggaccagaaataagcattagcaagcctcaattcagttgtggtcacaaac |
52511729 |
T |
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| Q |
501 |
aagaaggactgaaaaggatgtagt |
524 |
Q |
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|||||||||||||||||||||||| |
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| T |
52511730 |
aagaaggactgaaaaggatgtagt |
52511753 |
T |
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