View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6524_low_5 (Length: 452)

Name: NF6524_low_5
Description: NF6524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6524_low_5
NF6524_low_5
[»] chr5 (5 HSPs)
chr5 (146-412)||(34530-34796)
chr5 (52-183)||(41197421-41197552)
chr5 (26-184)||(36779466-36779622)
chr5 (118-195)||(30376480-30376557)
chr5 (91-172)||(34905529-34905610)
[»] chr1 (9 HSPs)
chr1 (15-183)||(11351662-11351830)
chr1 (18-183)||(6784159-6784324)
chr1 (15-183)||(20639468-20639636)
chr1 (33-183)||(21515101-21515249)
chr1 (15-164)||(32988972-32989121)
chr1 (146-183)||(2536547-2536584)
chr1 (115-178)||(44839927-44839990)
chr1 (146-179)||(3601290-3601323)
chr1 (146-194)||(12539125-12539173)
[»] chr2 (3 HSPs)
chr2 (15-183)||(24543091-24543259)
chr2 (15-183)||(29894386-29894554)
chr2 (15-183)||(36364918-36365086)
[»] chr8 (3 HSPs)
chr8 (15-172)||(18481111-18481268)
chr8 (17-168)||(32536206-32536357)
chr8 (115-179)||(26440784-26440848)
[»] chr3 (8 HSPs)
chr3 (15-183)||(51976638-51976806)
chr3 (15-179)||(36684783-36684947)
chr3 (19-179)||(8705594-8705754)
chr3 (19-179)||(9057481-9057641)
chr3 (27-172)||(45736356-45736501)
chr3 (15-183)||(4978479-4978648)
chr3 (19-172)||(26390803-26390956)
chr3 (66-195)||(49758971-49759100)
[»] chr6 (2 HSPs)
chr6 (15-183)||(942571-942739)
chr6 (146-183)||(4513081-4513118)
[»] chr4 (4 HSPs)
chr4 (15-183)||(43989323-43989490)
chr4 (67-183)||(19315955-19316071)
chr4 (146-179)||(1394134-1394167)
chr4 (146-178)||(9633067-9633099)
[»] chr7 (4 HSPs)
chr7 (15-183)||(23820401-23820569)
chr7 (19-131)||(24808868-24808980)
chr7 (115-179)||(21118373-21118437)
chr7 (146-206)||(40901847-40901907)
[»] scaffold0041 (1 HSPs)
scaffold0041 (146-206)||(48111-48171)


Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 146 - 412
Target Start/End: Original strand, 34530 - 34796
Alignment:
Q  146 agaactctcatgtcgagttcaataggaagcaagccaatatgatcgctcataacttaacacatgtaataaaaattcannnnnnnagaggaccaaaatcgca 245  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||       |||||||||||||||||    
T  34530 agaactctcatgtcgagtttaataggaagcaagccaatatggtcgctcaaaacttaacacatgtaataaaaattcatttttttagaggaccaaaatcgca 34629  T
Q  246 actctaatacttaggggtctaaactgttattaagcattttcaataccgtnnnnnnnntgattttttatttgtctaaataacttgtgtgaaaaaggtaata 345  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||        |||||||||||||||||||||||||| ||||||||||||||||    
T  34630 actctaatacttaggggtcaaaactgttattaagcattttcaataccgtaaaaaaaatgattttttatttgtctaaataacttttgtgaaaaaggtaata 34729  T
Q  346 atttatcctttaatatccatccattgaacaaacacgggcttattatacaaattttatttacccttgt 412  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34730 atttatccttcaatatccatccattgaacaaacacgggcttattatacaaattttatttacccttgt 34796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 52 - 183
Target Start/End: Complemental strand, 41197552 - 41197421
Alignment:
Q  52 tctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggcttgtagacagttgttcgattgtagtttctagaact 151  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||  ||||||    
T  41197552 tctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattatttaggcttatagacagttgttcgattgtaattttcagaact 41197453  T
Q  152 ctcatgtcgagttcaataggaagcaagccaat 183  Q
    || |||||||||||||||||| ||||||||||    
T  41197452 cttatgtcgagttcaataggaggcaagccaat 41197421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 26 - 184
Target Start/End: Complemental strand, 36779622 - 36779466
Alignment:
Q  26 atgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggcttgtagaca 125  Q
    ||||||||||| ||||||||| ||||||| ||||||||| ||||||||||||||||  ||| || ||||||||||||||||||||| |||||||||| ||    
T  36779622 atgttgattttattttggattccaagtctattgttgaacgttttaattcaaacctaattgagagtagtgaactaggttgtattattaaggcttgtaggca 36779523  T
Q  126 gttgttcgattgtagtttctagaactctcatgtcgagttcaataggaagcaagccaata 184  Q
    |||||| | ||||| ||   |||||||||||||||||| |||||||| |||||||||||    
T  36779522 gttgtttggttgtaatt--cagaactctcatgtcgagtacaataggaggcaagccaata 36779466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 118 - 195
Target Start/End: Complemental strand, 30376557 - 30376480
Alignment:
Q  118 tgtagacagttgttcgattgtagtttctagaactctcatgtcgagttcaataggaagcaagccaatatgatcgctcat 195  Q
    ||||| ||||||||||||| || |||  | |||||| |||||||||||||||||| ||||||||||| | ||||||||    
T  30376557 tgtaggcagttgttcgattataattttcaaaactcttatgtcgagttcaataggaggcaagccaatagggtcgctcat 30376480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 172
Target Start/End: Original strand, 34905529 - 34905610
Alignment:
Q  91 agtgaactaggttgtattattcaggcttgtagacagttgttcgattgtagtttctagaactctcatgtcgagttcaatagga 172  Q
    ||||| ||||||||| |||| || ||||||||||||||||| | |  ||||||  ||||||||  ||| |||||||||||||    
T  34905529 agtgagctaggttgtgttatacatgcttgtagacagttgtttgttaatagttttcagaactcttgtgttgagttcaatagga 34905610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 153; Significance: 6e-81; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 15 - 183
Target Start/End: Complemental strand, 11351830 - 11351662
Alignment:
Q  15 tcattatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcag 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11351830 tcattatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcag 11351731  T
Q  115 gcttgtagacagttgttcgattgtagtttctagaactctcatgtcgagttcaataggaagcaagccaat 183  Q
    ||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||| ||||||||||    
T  11351730 gcttgtagacagttgttcgattgtaattttcagaactctcatgtcgagttcaataggaggcaagccaat 11351662  T

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Target: chr1; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 6784159 - 6784324
Alignment:
Q  18 ttatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggct 117  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6784159 ttatgacaatgttgattttgttttggattgcaagtctcttgttgaacgttttaatttaaacctaggtgatagcagtgaactaggttgtattattcaggct 6784258  T
Q  118 tgtagacagttgttcgattgtagtttctagaactctcatgtcgagttcaataggaagcaagccaat 183  Q
    |||||||||||||||||||||  |||  ||||||||||||||||||||||||||| ||||||||||    
T  6784259 tgtagacagttgttcgattgttattttcagaactctcatgtcgagttcaataggaggcaagccaat 6784324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 15 - 183
Target Start/End: Original strand, 20639468 - 20639636
Alignment:
Q  15 tcattatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcag 114  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  20639468 tcattatgacaatgttgattttgttttggattccaagtttgttgttgaacattttaattcaaacctaggtgatagtagtgaactaggttgtattattcag 20639567  T
Q  115 gcttgtagacagttgttcgattgtagtttctagaactctcatgtcgagttcaataggaagcaagccaat 183  Q
    |||||||| |||||||||||||||| |||  ||||||||||||| ||||||||||||| ||||||||||    
T  20639568 gcttgtaggcagttgttcgattgtaattttcagaactctcatgttgagttcaataggaggcaagccaat 20639636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 33 - 183
Target Start/End: Original strand, 21515101 - 21515249
Alignment:
Q  33 ttttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggcttgtagacagttgttc 132  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||    
T  21515101 ttttgttttggattgcaagtctgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtatttttcaggtttgtaggcagttgttc 21515200  T
Q  133 gattgtagtttctagaactctcatgtcgagttcaataggaagcaagccaat 183  Q
    || |||| |||  ||||  ||||||||||||||||||||| ||||||||||    
T  21515201 gaatgtaattttcagaa--ctcatgtcgagttcaataggaggcaagccaat 21515249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 15 - 164
Target Start/End: Complemental strand, 32989121 - 32988972
Alignment:
Q  15 tcattatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcag 114  Q
    |||||||||| |||| |||||||||| ||||| ||||| ||||||||||| |||||||| |||| || ||||||||||||||||||||||||||||||||    
T  32989121 tcattatgacgatgtggattttgtttcggattccaagtatgttgttgaacgttttaatttaaacttacgtgatagcagtgaactaggttgtattattcag 32989022  T
Q  115 gcttgtagacagttgttcgattgtagtttctagaactctcatgtcgagtt 164  Q
     ||||||| ||||||||||||||||  ||  |||||||||||||||||||    
T  32989021 acttgtaggcagttgttcgattgtaactttcagaactctcatgtcgagtt 32988972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 146 - 183
Target Start/End: Complemental strand, 2536584 - 2536547
Alignment:
Q  146 agaactctcatgtcgagttcaataggaagcaagccaat 183  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  2536584 agaactctcatgtcgagttcaataggaggcaagccaat 2536547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 178
Target Start/End: Complemental strand, 44839990 - 44839927
Alignment:
Q  115 gcttgtagacagttgttcgattgtagtttctagaactctcatgtcgagttcaataggaagcaag 178  Q
    ||||||||||| ||||| ||   ||||||  ||||||||||||||||||||||||||| |||||    
T  44839990 gcttgtagacaattgtttgacaatagttttcagaactctcatgtcgagttcaataggaggcaag 44839927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 179
Target Start/End: Complemental strand, 3601323 - 3601290
Alignment:
Q  146 agaactctcatgtcgagttcaataggaagcaagc 179  Q
    ||||||||||||||||||||||||||| ||||||    
T  3601323 agaactctcatgtcgagttcaataggaggcaagc 3601290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 12539125 - 12539173
Alignment:
Q  146 agaactctcatgtcgagttcaataggaagcaagccaatatgatcgctca 194  Q
    |||||||||||||||||||||| |||| |||||| |||| ||| |||||    
T  12539125 agaactctcatgtcgagttcaacaggaggcaagcaaataggatagctca 12539173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 149; Significance: 2e-78; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 15 - 183
Target Start/End: Original strand, 24543091 - 24543259
Alignment:
Q  15 tcattatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcag 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24543091 tcattatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcag 24543190  T
Q  115 gcttgtagacagttgttcgattgtagtttctagaactctcatgtcgagttcaataggaagcaagccaat 183  Q
    ||||||||| ||||||||||||||| |||  ||||||||||||||||||||||||||| ||||||||||    
T  24543191 gcttgtagatagttgttcgattgtaattttcagaactctcatgtcgagttcaataggatgcaagccaat 24543259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 15 - 183
Target Start/End: Complemental strand, 29894554 - 29894386
Alignment:
Q  15 tcattatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcag 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  29894554 tcattatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactagattgtattattcag 29894455  T
Q  115 gcttgtagacagttgttcgattgtagtttctagaactctcatgtcgagttcaataggaagcaagccaat 183  Q
    ||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||| ||||||||||    
T  29894454 gcttgtagacagttgttcgattgtaattttcagaactctcatgtcgagttcaataggaggcaagccaat 29894386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 15 - 183
Target Start/End: Original strand, 36364918 - 36365086
Alignment:
Q  15 tcattatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcag 114  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||     
T  36364918 tcattatgacaatgttgattttgttttggattccaagtctgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcat 36365017  T
Q  115 gcttgtagacagttgttcgattgtagtttctagaactctcatgtcgagttcaataggaagcaagccaat 183  Q
     ||||||| |||||||||||||||  |||  ||||||| ||||||||||||||||||| ||||||||||    
T  36365018 acttgtaggcagttgttcgattgtcattttcagaactcccatgtcgagttcaataggaggcaagccaat 36365086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 15 - 172
Target Start/End: Original strand, 18481111 - 18481268
Alignment:
Q  15 tcattatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcag 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18481111 tcattatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcag 18481210  T
Q  115 gcttgtagacagttgttcgattgtagtttctagaactctcatgtcgagttcaatagga 172  Q
    ||||||||| ||||||||||||||| |||  |||||||||||||||||||||||||||    
T  18481211 gcttgtagatagttgttcgattgtaattttcagaactctcatgtcgagttcaatagga 18481268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 168
Target Start/End: Complemental strand, 32536357 - 32536206
Alignment:
Q  17 attatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggc 116  Q
    |||||||  |||| ||||||| |||||||| ||||| | |||| || |  ||| ||||||||||||  ||||  ||||||||||||||||||||||||||    
T  32536357 attatgatcatgtcgattttgctttggattacaagtttattgtagatcgctttcattcaaacctagacgataatagtgaactaggttgtattattcaggc 32536258  T
Q  117 ttgtagacagttgttcgattgtagtttctagaactctcatgtcgagttcaat 168  Q
    ||||| ||| ||| | | ||||| |||   ||||||| ||||||||||||||    
T  32536257 ttgtaaacaattgattgcttgtaattttatgaactcttatgtcgagttcaat 32536206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 115 - 179
Target Start/End: Original strand, 26440784 - 26440848
Alignment:
Q  115 gcttgtagacagttgttcgattgtagtttctagaactctcatgtcgagttcaataggaagcaagc 179  Q
    ||||||||||||||||| ||   |||||| |||||||||||||||||||||||||||| ||||||    
T  26440784 gcttgtagacagttgtttgacaatagtttttagaactctcatgtcgagttcaataggaggcaagc 26440848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 141; Significance: 9e-74; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 15 - 183
Target Start/End: Original strand, 51976638 - 51976806
Alignment:
Q  15 tcattatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcag 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51976638 tcattatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcag 51976737  T
Q  115 gcttgtagacagttgttcgattgtagtttctagaactctcatgtcgagttcaataggaagcaagccaat 183  Q
    ||||||||| ||||||| ||||||| |||  |||||||||||| |||||||||||||| ||||||||||    
T  51976738 gcttgtagaaagttgtttgattgtaattttcagaactctcatgccgagttcaataggaggcaagccaat 51976806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 15 - 179
Target Start/End: Original strand, 36684783 - 36684947
Alignment:
Q  15 tcattatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcag 114  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  36684783 tcattatgacaatgttgattttgttttggattgcaagtttgttgttgaacattttaattcaaacctaggtgatagtagtgaactaggttgtatcattcag 36684882  T
Q  115 gcttgtagacagttgttcgattgtagtttctagaactctcatgtcgagttcaataggaagcaagc 179  Q
    ||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||| ||||||    
T  36684883 gcttgtagacagttgttcgattgtaattttcagaactctcatgtcgagttcaataggaggcaagc 36684947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 19 - 179
Target Start/End: Original strand, 8705594 - 8705754
Alignment:
Q  19 tatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggctt 118  Q
    |||||| ||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  8705594 tatgaccatgttgattttgttttggattccaagtatgttgttgaacgttttaattcaaacctagttgatagtagtgaactaggttgtattattcaggctt 8705693  T
Q  119 gtagacagttgttcgattgtagtttctagaactctcatgtcgagttcaataggaagcaagc 179  Q
    |||| |||||||| ||||||| |||  ||||||||||||||||||||||||||| ||||||    
T  8705694 gtaggcagttgtttgattgtaattttcagaactctcatgtcgagttcaataggaggcaagc 8705754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 19 - 179
Target Start/End: Original strand, 9057481 - 9057641
Alignment:
Q  19 tatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggctt 118  Q
    |||||| ||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  9057481 tatgaccatgttgattttgttttggattccaagtatgttgttgaacgttttaattcaaacctagttgatagtagtgaactaggttgtattattcaggctt 9057580  T
Q  119 gtagacagttgttcgattgtagtttctagaactctcatgtcgagttcaataggaagcaagc 179  Q
    |||| |||||||| ||||||| |||  ||||||||||||||||||||||||||| ||||||    
T  9057581 gtaggcagttgtttgattgtaattttcagaactctcatgtcgagttcaataggaggcaagc 9057641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 27 - 172
Target Start/End: Original strand, 45736356 - 45736501
Alignment:
Q  27 tgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggcttgtagacag 126  Q
    |||||||||||||||||||| ||||| ||||||| ||| |||||||| ||| |||| ||||||||||||| |||||||||||||| ||| |||||| ||     
T  45736356 tgttgattttgttttggatttcaagtttgttgttcaacgttttaatttaaatctagatgatagcagtgaattaggttgtattatttaggtttgtaggcaa 45736455  T
Q  127 ttgttcgattgtagtttctagaactctcatgtcgagttcaatagga 172  Q
    ||||||||||||| |||  |||||||||||||||||||||||||||    
T  45736456 ttgttcgattgtaattttcagaactctcatgtcgagttcaatagga 45736501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 15 - 183
Target Start/End: Complemental strand, 4978648 - 4978479
Alignment:
Q  15 tcattatgacaatgttgattttgttttggattgcaagtctgttgtt-gaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattca 113  Q
    ||||| |||||||||| ||||||||||||||| ||| | ||||||| |||| |||||||||||||||||||||||  ||| ||||||||||||||||||     
T  4978648 tcattctgacaatgttaattttgttttggattccaaatatgttgtttgaacgttttaattcaaacctaggtgataatagtaaactaggttgtattattct 4978549  T
Q  114 ggcttgtagacagttgttcgattgtagtttctagaactctcatgtcgagttcaataggaagcaagccaat 183  Q
    ||||||||| || ||||||| || || |||  ||||||||||||||||||| |||| ||  |||||||||    
T  4978548 ggcttgtaggcacttgttcggttataattttcagaactctcatgtcgagtttaatatgagacaagccaat 4978479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 19 - 172
Target Start/End: Complemental strand, 26390956 - 26390803
Alignment:
Q  19 tatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggctt 118  Q
    ||||| ||||| || |||| |||||||| |||| |  |||| || | |||||| | ||||||||  ||||| |||||||||||||| ||||| || ||||    
T  26390956 tatgataatgtcgactttgctttggatttcaaggcacttgtagatcgttttaactgaaacctagaagatagtagtgaactaggttgcattatacaagctt 26390857  T
Q  119 gtagacagttgttcgattgtagtttctagaactctcatgtcgagttcaatagga 172  Q
    ||||||||||||| | ||||||||| || ||||||| |||||||||||||||||    
T  26390856 gtagacagttgtttgcttgtagtttttataactctcgtgtcgagttcaatagga 26390803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 66 - 195
Target Start/End: Complemental strand, 49759100 - 49758971
Alignment:
Q  66 ttttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggcttgtagacagttgttcgattgtagtttctagaactctcatgtcgagttc 165  Q
    |||||||||||||||||  ||||| |||||||||||||| ||||||||| ||||||| | |||| | | ||||| |||  |||||||| |||||| ||||    
T  49759100 ttttaattcaaacctagaggatagtagtgaactaggttgcattattcagacttgtaggctgttgcttgcttgtaattttcagaactcttatgtcgggttc 49759001  T
Q  166 aataggaagcaagccaatatgatcgctcat 195  Q
    ||||||| |||||| |||  ||||||||||    
T  49759000 aataggaggcaagctaatgggatcgctcat 49758971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 133; Significance: 5e-69; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 15 - 183
Target Start/End: Original strand, 942571 - 942739
Alignment:
Q  15 tcattatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcag 114  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  942571 tcattatgacaatgttgattttgttttggattccaagtctgttgttgaacattttaagtcaaacctaggtgatagtagtgaactaggttgtattattcag 942670  T
Q  115 gcttgtagacagttgttcgattgtagtttctagaactctcatgtcgagttcaataggaagcaagccaat 183  Q
    |||||||| |||||||||||||||| |||  |||||||| |||||||||||||||||| ||||||||||    
T  942671 gcttgtaggcagttgttcgattgtaattttcagaactctaatgtcgagttcaataggaggcaagccaat 942739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 146 - 183
Target Start/End: Original strand, 4513081 - 4513118
Alignment:
Q  146 agaactctcatgtcgagttcaataggaagcaagccaat 183  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  4513081 agaactctcatgtcgagttcaataggaggcaagccaat 4513118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 133; Significance: 5e-69; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 15 - 183
Target Start/End: Complemental strand, 43989490 - 43989323
Alignment:
Q  15 tcattatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcag 114  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  43989490 tcattatgacaatgttgattttgttttggattgcaagtttgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcag 43989391  T
Q  115 gcttgtagacagttgttcgattgtagtttctagaactctcatgtcgagttcaataggaagcaagccaat 183  Q
    ||||| ||||| ||||||||||||| ||| |||||| ||||||||||||||||||||| ||||||||||    
T  43989390 gcttgcagacaattgttcgattgta-tttttagaacgctcatgtcgagttcaataggaggcaagccaat 43989323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 67 - 183
Target Start/End: Complemental strand, 19316071 - 19315955
Alignment:
Q  67 tttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggcttgtagacagttgttcgattgtagtttctagaactctcatgtcgagttca 166  Q
    ||||| |||||  ||| |||||| ||||| |||||||| ||||| || ||||||||| ||||||| | |   |||||  |||||||||||||||||||||    
T  19316071 tttaagtcaaatgtagatgatagtagtgagctaggttgcattatacatgcttgtagatagttgtttgttaacagttttcagaactctcatgtcgagttca 19315972  T
Q  167 ataggaagcaagccaat 183  Q
    |||||| ||||||||||    
T  19315971 ataggaggcaagccaat 19315955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 179
Target Start/End: Original strand, 1394134 - 1394167
Alignment:
Q  146 agaactctcatgtcgagttcaataggaagcaagc 179  Q
    ||||||||||||||||||||||||||| ||||||    
T  1394134 agaactctcatgtcgagttcaataggaggcaagc 1394167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 178
Target Start/End: Original strand, 9633067 - 9633099
Alignment:
Q  146 agaactctcatgtcgagttcaataggaagcaag 178  Q
    ||||||||||||||||||||||||||| |||||    
T  9633067 agaactctcatgtcgagttcaataggaggcaag 9633099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 109; Significance: 1e-54; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 15 - 183
Target Start/End: Original strand, 23820401 - 23820569
Alignment:
Q  15 tcattatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcag 114  Q
    |||||||||| ||||| ||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  23820401 tcattatgaccatgttaattttgttttggattccaagtctgttgttgtacactttaattcaaacctaggtgatagtagtgaactaggttgtatcattcag 23820500  T
Q  115 gcttgtagacagttgttcgattgtagtttctagaactctcatgtcgagttcaataggaagcaagccaat 183  Q
    | |||||| |||||||| ||||||| |||  ||||||||||| ||||||||||||||| ||||||||||    
T  23820501 gtttgtaggcagttgtttgattgtaattttcagaactctcatatcgagttcaataggaggcaagccaat 23820569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 24808980 - 24808868
Alignment:
Q  19 tatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggctt 118  Q
    |||||| |||||||||||||||| |||| ||||||||||||||| | ||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  24808980 tatgaccatgttgattttgttttagattccaagtctgttgttgatcgttttaattcaaacctagttgatagtagtgaactaggttgtattattcaggctt 24808881  T
Q  119 gtagacagttgtt 131  Q
    |||| ||||||||    
T  24808880 gtaggcagttgtt 24808868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 115 - 179
Target Start/End: Original strand, 21118373 - 21118437
Alignment:
Q  115 gcttgtagacagttgttcgattgtagtttctagaactctcatgtcgagttcaataggaagcaagc 179  Q
    ||||||||||||||||| ||   ||||||  ||||||||||||||||||||||||||| ||||||    
T  21118373 gcttgtagacagttgtttgacaatagttttcagaactctcatgtcgagttcaataggaggcaagc 21118437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 40901907 - 40901847
Alignment:
Q  146 agaactctcatgtcgagttcaataggaagcaagccaatatgatcgctcataacttaacaca 206  Q
    ||||||||||||||||||| ||||||| |||| | |||||| |||||||| | ||||||||    
T  40901907 agaactctcatgtcgagttgaataggaggcaaactaatatggtcgctcatgaattaacaca 40901847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 206
Target Start/End: Original strand, 48111 - 48171
Alignment:
Q  146 agaactctcatgtcgagttcaataggaagcaagccaatatgatcgctcataacttaacaca 206  Q
    ||||||||||||||||||| ||||||| |||| | |||||| |||||||| | ||||||||    
T  48111 agaactctcatgtcgagttgaataggaggcaaactaatatggtcgctcatgaattaacaca 48171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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