View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6524_low_6 (Length: 399)
Name: NF6524_low_6
Description: NF6524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6524_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 195 - 389
Target Start/End: Original strand, 45306158 - 45306345
Alignment:
| Q |
195 |
gctatactactaagtattaccaatgcctgtcagcttcccttctcttcttcatcaggtgcgtttcattatcattccttgttcttcttcatgtcaccaacat |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
45306158 |
gctatactactaagtattaccaatgcctgtcagcttcccttttcttcttcatcaggtgcgtttcattatcattccttg---ttcttcatgtcaccaacat |
45306254 |
T |
|
| Q |
295 |
ttttctaaccttcatacttgtaattgctgttannnnnnnactctcttaaatgtactagttttgtgtgtgtttgtggttgaggtttgattcctttg |
389 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
45306255 |
ttttctaatcttcatacttgtaattgctgttatttttttactctcttaaatgtactagttttgtgtg----tgtggttgaggtttgattcctttg |
45306345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 45305958 - 45306034
Alignment:
| Q |
19 |
agaatggcccatcactgcagatccaaatccccattataactgcttttcattctttcttctcacaagctaaaaaatca |
95 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45305958 |
agaatggcccatcactgcagatccaaatccccattataactgcttttcattctttcttctcacaagctaaaaaatca |
45306034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University