View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6524_low_8 (Length: 346)
Name: NF6524_low_8
Description: NF6524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6524_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 232
Target Start/End: Original strand, 26273901 - 26274122
Alignment:
| Q |
13 |
aatatcttgagaagcaatccctcattacattagaccttatttttgtaggaaccttgctagtaattgtacctaatttttggtacatatatctttccattac |
112 |
Q |
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| T |
26273901 |
aatatcttgagaagcaatccctcattacatttgactttatttttgtaggaaccttgctagtaattgtacctaatttttggtacatatatctttccattac |
26274000 |
T |
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| Q |
113 |
cttaaccattatgataacagcattatccacatgga--tctctacctaagactaaattatcaacttccacaatttttcttttgttgttgatgagatccaac |
210 |
Q |
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| T |
26274001 |
cttaaccattatgataacagcattatccacatggatctctctacctaagactaaattatcaacttccacaatttttcttttgttgttgatgagatccaac |
26274100 |
T |
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| Q |
211 |
ctacatagttggactttacaat |
232 |
Q |
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| T |
26274101 |
ctacatagttggactttacaat |
26274122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 261 - 328
Target Start/End: Original strand, 26274151 - 26274218
Alignment:
| Q |
261 |
tttaattaaaaatgacacttgttgtctcaacactggccttcttttattctgtaattttttctacaagt |
328 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
26274151 |
tttaattaaaaatgacacttgttgtctcaacactggccttcttttattctgtaatttcttctacaagt |
26274218 |
T |
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